Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 5,406,666 | T→C | 8.5% | R267G (AGG→GGG) | PP_4751 ← | amino acid ABC transporter ATP‑binding protein |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 5,406,666 | 0 | T | C | 8.5% | 133.2 / 2.2 | 47 | R267G (AGG→GGG) | PP_4751 | amino acid ABC transporter ATP‑binding protein |
Reads supporting (aligned to +/- strand): ref base T (25/18); new base C (2/2); total (27/20) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.31e-01 |
ACCCTGGACATGCGCAGGGCACAGATGGGAAACCCCAGCACTACGCCGACACAGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTCGGCGAAGTGCATCTCGTGAGTCACGACA > NC_002947/5406534‑5406814 | aCCCTGGACATGCGCAGGGCACAGATGGGAAACCCCAGCACTACGCCGACACAGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACt > 1:867470/1‑150 (MQ=255) ccTGGACATGCGCAGGGCACAGATGGGAAACCCCAGCACTACGCCGACACAGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTgg > 1:830548/1‑150 (MQ=255) cTGGACATGCGCAGGGCACAGATGGGAAACCCCAGCACTACGCCGACACAGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGa > 1:787010/1‑150 (MQ=255) gACATGCGCAGGGCACAGATGGGAAACCCCAGCACTACGCCGACACAGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCa > 1:108354/1‑150 (MQ=255) gcgcAGGGCACAGATTGGAAAACCCAGCGCCACGCCGACACAGAATGCCAGCACCGTACCGGCAATGGTCCAGGTTATACCGTTCAACAGCATCATCAGGACGTCTTTCATTATCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGt < 1:989504/150‑1 (MQ=255) cacaGATGGGAAACCCCAGCACTACGCCGACACAGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTc < 2:535961/150‑1 (MQ=255) caGATGGGAAACCCCAGCACTACGCCGACACAGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCgg < 1:727594/150‑1 (MQ=255) tGGGAAACCCCAGCACTACGCCGACACAGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCCCACTGCCTGAAGGAACt < 1:145595/125‑1 (MQ=255) tGGGAAACCCCAGCACTACGCCGACACAGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCCCACTGCCTGAAGGAACt > 2:145595/1‑125 (MQ=255) ggAAACCCCAGCACTACGCCGACACAGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTcgc < 2:830548/150‑1 (MQ=255) aaaCCCCAGCACTACGCCGACACAGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCgcgc > 1:1104386/1‑150 (MQ=255) cAGCACTACGCCGACACAGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACt > 2:891834/1‑150 (MQ=255) aGCACTACGCCGACACAGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTc < 1:891834/150‑1 (MQ=255) acaGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCgcgc < 1:576574/129‑1 (MQ=255) acaGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCgcgc > 2:576574/1‑129 (MQ=255) acaGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCg > 2:382016/1‑150 (MQ=255) aGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCgtg > 1:118308/1‑150 (MQ=255) aaTGCGAGCAAGGTACAGGACGTGGTACCGCGGATTGCGATCAACGGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGtt < 2:1104386/150‑1 (MQ=255) gAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCgatg < 2:108354/150‑1 (MQ=255) gAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCgatg < 1:382016/150‑1 (MQ=255) cGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATgcg > 1:623890/1‑150 (MQ=255) ggCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCa > 1:778994/1‑150 (MQ=255) aGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGaccac < 2:972713/150‑1 (MQ=255) gggTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCa > 1:1192999/1‑81 (MQ=255) gggTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCa < 2:1192999/81‑1 (MQ=255) ccGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATACGCCCGTCAGCCATTACCACCACCCggg > 2:710118/1‑149 (MQ=255) cGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTc < 2:867470/150‑1 (MQ=255) cGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTc > 2:530182/1‑150 (MQ=255) aCAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGacca > 1:765348/1‑134 (MQ=255) aCAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGacca < 2:765348/134‑1 (MQ=255) aCAGCATCATCAGGATGTATTTCATCAGCGATTACTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGAATCAATCGATGGCTCAACACCTGTTCGATGCTGAGCACGTCAGCCATGACCACCACCCGGTCGGacac > 2:264642/1‑150 (MQ=255) taGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGAGGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACg < 2:109211/149‑1 (MQ=255) atcatcAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGttt > 1:562412/1‑150 (MQ=255) tcatcaGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTc > 1:1142626/1‑150 (MQ=255) cTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTCGGCGAAGTGCAt < 1:530182/150‑1 (MQ=255) tttCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTCGGCGAAGTGCAtc > 1:824655/1‑150 (MQ=255) tcatcaGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTCGGCGAAGTGCAtctc > 2:494838/1‑150 (MQ=255) tcaGCGATTCCTCACTGCCTGAAGGAACTGGATCGGTCTTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTCGGCGAAGTGCATCTCGTg > 1:1066913/1‑150 (MQ=255) tcaGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTCGGCGAAGTGCATCTCGTg > 1:639433/1‑150 (MQ=255) tcaGCGATTCCCCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTCGGCGAAGTGCATCTCGTg > 2:1048490/1‑150 (MQ=255) caGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTCGGCGAAGTGCATCTCGTGa < 2:639433/150‑1 (MQ=255) caGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTCGGCGAAGTGCATCTCGTGa < 1:710118/150‑1 (MQ=255) aGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTCGGCGAAGTGCATCTCGTGAg > 2:172480/1‑150 (MQ=255) gCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTCGGCGAAGTGCATCTCGTGAGt > 2:745134/1‑150 (MQ=255) gATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGCGCTCGACCATCCATAGAAAACAAAGAGCCTACCCTCCCTCGTCAACGTCAGTCATGACTACCACCCGGGCGTACACGGTTTCGGCGAAGTGCATCTCGTGAGTCa < 2:787010/150‑1 (MQ=255) aTTCCCCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTCGGCGAAGTGCATCTCGTGAGTCAc < 1:1048490/150‑1 (MQ=255) cTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTCGGCGAAGTGCATCTCGTGAGTCACGACa > 1:587413/1‑150 (MQ=255) | ACCCTGGACATGCGCAGGGCACAGATGGGAAACCCCAGCACTACGCCGACACAGAATGCGAGCACGGTAACGGCAATGGTCCAGGGTATGCCGTTCAACAGCATCATCAGGATGTCTTTCATCAGCGATTCCTCACTGCCTGAAGGAACTGGATCACCCGTTCATGCTCGGGCTCGCGCATCACTCGCTGGCTCGGCCCGTGTTCGATGATGCGCCCGTCAGCCATGACCACCACCCGGTCGGACACGGTTTCGGCGAAGTGCATCTCGTGAGTCACGACA > NC_002947/5406534‑5406814 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |