New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	6009165 =	54 (0.520)	22 (0.280)	13/202	6.4	43.7%	intergenic (+6/+76)	norM/PP_5263	multidrug resistance protein NorM/GGDEF domain‑containing protein
	?	NC_002947	6009242 =	16 (0.200)					coding (1667/1668 nt)	PP_5263	GGDEF domain‑containing protein
Rejected: Coverage evenness skew score above cutoff.

GCGGTGGTGCAGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAA  >  NC_002947/6009017‑6009234                                                                                                                                                     |                                                                      gCGGTGGTGCAGTCGGGATCTGGTGGGGGCTGGCGCTTCCCCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg                                                                      <  1:23951/150‑1 (MQ=255)   ggtggtGCAGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGc                                                                    <  2:364202/150‑1 (MQ=255)         gCAGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTc                                                              <  1:2160886/150‑1 (MQ=255)           aGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTcgc                                                            >  1:27255/1‑150 (MQ=255)               gggATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGCCTTCCGGGCCTCTTCGCGGGc                                                        <  2:671099/150‑1 (MQ=255)                 gATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCAc                                                      >  1:2343808/1‑150 (MQ=255)                    cTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGcc                                                   <  1:2095506/150‑1 (MQ=255)                     tggtggGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGccc                                                  <  2:1742679/150‑1 (MQ=255)                      ggtggGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCg                                                 >  2:1214097/1‑150 (MQ=255)                          ggggCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCTGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTcc                                             <  1:513470/150‑1 (MQ=255)                               tGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAg                                        <  2:2343808/150‑1 (MQ=255)                               tGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAg                                        >  2:1265600/1‑150 (MQ=255)                                ggCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg                                                                      <  2:1939891/119‑1 (MQ=255)                                ggCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTGGAGGGGCGGATCAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg                                                                      >  1:1939891/1‑119 (MQ=255)                                    cTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTg                                   <  1:84786/150‑1 (MQ=255)                                                tgtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtgt                       <  1:1214097/150‑1 (MQ=255)                                                 gtgCGGCGGTGGCGCTGACCTTTGGCTTTGGGTACGGGATTAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtgtg                      <  2:837109/150‑1 (MQ=255)                                                 gtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtgtg                      <  2:2466995/150‑1 (MQ=255)                                                 gtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGATGTGCGCGGTCCCtgtg                      <  1:86904/150‑1 (MQ=255)                                                 gggcggcgGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtgtg                      <  1:242623/148‑1 (MQ=255)                                                  tgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGGTCCCACAGGATTGCGCGGTCCCTGTgg                     <  2:27255/150‑1 (MQ=255)                                                  tgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTgg                     <  1:2253476/150‑1 (MQ=255)                                                    cggcggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGa                   <  1:127336/150‑1 (MQ=255)                                                      gcggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGc                 <  2:231701/150‑1 (MQ=255)                                                         gtggtgCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCggg              <  1:1547400/150‑1 (MQ=255)                                                          tGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGc             <  1:1265600/150‑1 (MQ=255)                                                            gcgcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGt           <  2:2171576/150‑1 (MQ=255)                                                              gcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGcc                                                                   <  2:869437/92‑1 (MQ=255)                                                              gcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGcc                                                                   >  1:869437/1‑92 (MQ=255)                                                                    cTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGa                   >  1:649474/1‑134 (MQ=255)                                                                    cTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGa                   <  2:649474/134‑1 (MQ=255)                                                                    cTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGa   <  1:728916/150‑1 (MQ=255)                                                                     tttGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGc                 >  2:1195933/1‑135 (MQ=255)                                                                     tttGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGc                 <  1:1195933/135‑1 (MQ=255)                                                                       tGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCcaca                                         >  1:2387939/1‑109 (MQ=255)                                                                       tGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCcaca                                         <  2:2387939/109‑1 (MQ=255)                                                                          cTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGc                                                                    <  2:1830337/79‑1 (MQ=255)                                                                          cTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGc                                                                    >  1:1830337/1‑79 (MQ=255)                                                                                     ggATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGc             >  2:1273070/1‑123 (MQ=255)                                                                                     ggATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGc             <  1:1273070/123‑1 (MQ=255)                                                                                                      ggTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg                                                                      >  2:1178525/1‑49 (MQ=255)                                                                                                      ggTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg                                                                      <  1:1178525/49‑1 (MQ=255)                                                                                                                          aGAAGCTGCTGTTTCGGCCTTACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGaa  <  1:2098605/97‑1 (MQ=255)                                                                                                                          aGAAGCTGCTGTTTCGGCCTTACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGaa  >  2:2098605/1‑97 (MQ=255)                                                                                                                          aGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtg                        >  1:2021986/1‑75 (MQ=255)                                                                                                                          aGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtg                        <  2:2021986/75‑1 (MQ=255)                                                                                                                              gctgctGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGcac           <  2:2451299/84‑3 (MQ=255)                                                                                                                              gctgctGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGcac           >  1:2451299/1‑82 (MQ=255)                                                                                                                                 gctgTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGTACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTgg                     <  1:1645878/71‑1 (MQ=255)                                                                                                                                 gctgTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGTACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTgg                     >  2:1645878/1‑71 (MQ=255)                                                                                                                                     tttCTGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCC‑CAGGATTGCGCGGTCCCTGTgg                     >  1:1756038/1‑66 (MQ=37)                                                                                                                                     tttCTGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCC‑CAGGATTGCGCGGTCCCTGTgg                     <  2:1756038/66‑1 (MQ=37)                                                                                                                                                 ttCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGttc                           <  1:1403007/49‑3 (MQ=255)                                                                                                                                                 ttCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGttc                           >  2:1403007/1‑47 (MQ=255)                                                                                                                                                     |                                                                      GCGGTGGTGCAGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAA  >  NC_002947/6009017‑6009234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.