New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 6009165 = | 54 (0.520) | 22 (0.280) | 13/202 | 6.4 | 43.7% | intergenic (+6/+76) | norM/PP_5263 | multidrug resistance protein NorM/GGDEF domain‑containing protein |
? | NC_002947 | 6009242 = | 16 (0.200) | coding (1667/1668 nt) | PP_5263 | GGDEF domain‑containing protein | |||||
Rejected: Coverage evenness skew score above cutoff. |
GCGGTGGTGCAGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAA > NC_002947/6009017‑6009234 | gCGGTGGTGCAGTCGGGATCTGGTGGGGGCTGGCGCTTCCCCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg < 1:23951/150‑1 (MQ=255) ggtggtGCAGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGc < 2:364202/150‑1 (MQ=255) gCAGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTc < 1:2160886/150‑1 (MQ=255) aGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTcgc > 1:27255/1‑150 (MQ=255) gggATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGCCTTCCGGGCCTCTTCGCGGGc < 2:671099/150‑1 (MQ=255) gATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCAc > 1:2343808/1‑150 (MQ=255) cTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGcc < 1:2095506/150‑1 (MQ=255) tggtggGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGccc < 2:1742679/150‑1 (MQ=255) ggtggGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCg > 2:1214097/1‑150 (MQ=255) ggggCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCTGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTcc < 1:513470/150‑1 (MQ=255) tGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAg < 2:2343808/150‑1 (MQ=255) tGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAg > 2:1265600/1‑150 (MQ=255) ggCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg < 2:1939891/119‑1 (MQ=255) ggCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTGGAGGGGCGGATCAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg > 1:1939891/1‑119 (MQ=255) cTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTg < 1:84786/150‑1 (MQ=255) tgtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtgt < 1:1214097/150‑1 (MQ=255) gtgCGGCGGTGGCGCTGACCTTTGGCTTTGGGTACGGGATTAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtgtg < 2:837109/150‑1 (MQ=255) gtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtgtg < 2:2466995/150‑1 (MQ=255) gtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGATGTGCGCGGTCCCtgtg < 1:86904/150‑1 (MQ=255) gggcggcgGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtgtg < 1:242623/148‑1 (MQ=255) tgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGGTCCCACAGGATTGCGCGGTCCCTGTgg < 2:27255/150‑1 (MQ=255) tgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTgg < 1:2253476/150‑1 (MQ=255) cggcggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGa < 1:127336/150‑1 (MQ=255) gcggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGc < 2:231701/150‑1 (MQ=255) gtggtgCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCggg < 1:1547400/150‑1 (MQ=255) tGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGc < 1:1265600/150‑1 (MQ=255) gcgcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGt < 2:2171576/150‑1 (MQ=255) gcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGcc < 2:869437/92‑1 (MQ=255) gcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGcc > 1:869437/1‑92 (MQ=255) cTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGa > 1:649474/1‑134 (MQ=255) cTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGa < 2:649474/134‑1 (MQ=255) cTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGa < 1:728916/150‑1 (MQ=255) tttGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGc > 2:1195933/1‑135 (MQ=255) tttGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGc < 1:1195933/135‑1 (MQ=255) tGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCcaca > 1:2387939/1‑109 (MQ=255) tGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCcaca < 2:2387939/109‑1 (MQ=255) cTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGc < 2:1830337/79‑1 (MQ=255) cTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGc > 1:1830337/1‑79 (MQ=255) ggATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGc > 2:1273070/1‑123 (MQ=255) ggATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGc < 1:1273070/123‑1 (MQ=255) ggTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg > 2:1178525/1‑49 (MQ=255) ggTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg < 1:1178525/49‑1 (MQ=255) aGAAGCTGCTGTTTCGGCCTTACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGaa < 1:2098605/97‑1 (MQ=255) aGAAGCTGCTGTTTCGGCCTTACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGaa > 2:2098605/1‑97 (MQ=255) aGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtg > 1:2021986/1‑75 (MQ=255) aGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtg < 2:2021986/75‑1 (MQ=255) gctgctGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGcac < 2:2451299/84‑3 (MQ=255) gctgctGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGcac > 1:2451299/1‑82 (MQ=255) gctgTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGTACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTgg < 1:1645878/71‑1 (MQ=255) gctgTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGTACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTgg > 2:1645878/1‑71 (MQ=255) tttCTGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCC‑CAGGATTGCGCGGTCCCTGTgg > 1:1756038/1‑66 (MQ=37) tttCTGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCC‑CAGGATTGCGCGGTCCCTGTgg < 2:1756038/66‑1 (MQ=37) ttCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGttc < 1:1403007/49‑3 (MQ=255) ttCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGttc > 2:1403007/1‑47 (MQ=255) | GCGGTGGTGCAGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAA > NC_002947/6009017‑6009234 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |