New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 6009165 =54 (0.520)22 (0.280) 13/202 6.4 43.7% intergenic (+6/+76) norM/PP_5263 multidrug resistance protein NorM/GGDEF domain‑containing protein
?NC_002947 6009242 = 16 (0.200)coding (1667/1668 nt) PP_5263 GGDEF domain‑containing protein
Rejected: Coverage evenness skew score above cutoff.

GCGGTGGTGCAGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAA  >  NC_002947/6009017‑6009234
                                                                                                                                                    |                                                                     
gCGGTGGTGCAGTCGGGATCTGGTGGGGGCTGGCGCTTCCCCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg                                                                      <  1:23951/150‑1 (MQ=255)
  ggtggtGCAGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGc                                                                    <  2:364202/150‑1 (MQ=255)
        gCAGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTc                                                              <  1:2160886/150‑1 (MQ=255)
          aGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTcgc                                                            >  1:27255/1‑150 (MQ=255)
              gggATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGCCTTCCGGGCCTCTTCGCGGGc                                                        <  2:671099/150‑1 (MQ=255)
                gATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCAc                                                      >  1:2343808/1‑150 (MQ=255)
                   cTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGcc                                                   <  1:2095506/150‑1 (MQ=255)
                    tggtggGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGccc                                                  <  2:1742679/150‑1 (MQ=255)
                     ggtggGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCg                                                 >  2:1214097/1‑150 (MQ=255)
                         ggggCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCTGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTcc                                             <  1:513470/150‑1 (MQ=255)
                              tGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAg                                        <  2:2343808/150‑1 (MQ=255)
                              tGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAg                                        >  2:1265600/1‑150 (MQ=255)
                               ggCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg                                                                      <  2:1939891/119‑1 (MQ=255)
                               ggCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTGGAGGGGCGGATCAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg                                                                      >  1:1939891/1‑119 (MQ=255)
                                   cTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTg                                   <  1:84786/150‑1 (MQ=255)
                                               tgtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtgt                       <  1:1214097/150‑1 (MQ=255)
                                                gtgCGGCGGTGGCGCTGACCTTTGGCTTTGGGTACGGGATTAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtgtg                      <  2:837109/150‑1 (MQ=255)
                                                gtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtgtg                      <  2:2466995/150‑1 (MQ=255)
                                                gtgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGATGTGCGCGGTCCCtgtg                      <  1:86904/150‑1 (MQ=255)
                                                gggcggcgGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtgtg                      <  1:242623/148‑1 (MQ=255)
                                                 tgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGGTCCCACAGGATTGCGCGGTCCCTGTgg                     <  2:27255/150‑1 (MQ=255)
                                                 tgCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTgg                     <  1:2253476/150‑1 (MQ=255)
                                                   cggcggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGa                   <  1:127336/150‑1 (MQ=255)
                                                     gcggTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGc                 <  2:231701/150‑1 (MQ=255)
                                                        gtggtgCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCggg              <  1:1547400/150‑1 (MQ=255)
                                                         tGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGc             <  1:1265600/150‑1 (MQ=255)
                                                           gcgcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGt           <  2:2171576/150‑1 (MQ=255)
                                                             gcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGcc                                                                   <  2:869437/92‑1 (MQ=255)
                                                             gcTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGcc                                                                   >  1:869437/1‑92 (MQ=255)
                                                                   cTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGa                   >  1:649474/1‑134 (MQ=255)
                                                                   cTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGa                   <  2:649474/134‑1 (MQ=255)
                                                                   cTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGa   <  1:728916/150‑1 (MQ=255)
                                                                    tttGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGc                 >  2:1195933/1‑135 (MQ=255)
                                                                    tttGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGc                 <  1:1195933/135‑1 (MQ=255)
                                                                      tGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCcaca                                         >  1:2387939/1‑109 (MQ=255)
                                                                      tGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCcaca                                         <  2:2387939/109‑1 (MQ=255)
                                                                         cTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGc                                                                    <  2:1830337/79‑1 (MQ=255)
                                                                         cTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGc                                                                    >  1:1830337/1‑79 (MQ=255)
                                                                                    ggATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGc             >  2:1273070/1‑123 (MQ=255)
                                                                                    ggATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGc             <  1:1273070/123‑1 (MQ=255)
                                                                                                     ggTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg                                                                      >  2:1178525/1‑49 (MQ=255)
                                                                                                     ggTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCgg                                                                      <  1:1178525/49‑1 (MQ=255)
                                                                                                                         aGAAGCTGCTGTTTCGGCCTTACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGaa  <  1:2098605/97‑1 (MQ=255)
                                                                                                                         aGAAGCTGCTGTTTCGGCCTTACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGaa  >  2:2098605/1‑97 (MQ=255)
                                                                                                                         aGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtg                        >  1:2021986/1‑75 (MQ=255)
                                                                                                                         aGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCtg                        <  2:2021986/75‑1 (MQ=255)
                                                                                                                             gctgctGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGcac           <  2:2451299/84‑3 (MQ=255)
                                                                                                                             gctgctGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGcac           >  1:2451299/1‑82 (MQ=255)
                                                                                                                                gctgTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGTACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTgg                     <  1:1645878/71‑1 (MQ=255)
                                                                                                                                gctgTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGTACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTgg                     >  2:1645878/1‑71 (MQ=255)
                                                                                                                                    tttCTGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCCAGGATTGCGCGGTCCCTGTgg                     >  1:1756038/1‑66 (MQ=37)
                                                                                                                                    tttCTGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCCAGGATTGCGCGGTCCCTGTgg                     <  2:1756038/66‑1 (MQ=37)
                                                                                                                                                ttCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGttc                           <  1:1403007/49‑3 (MQ=255)
                                                                                                                                                ttCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGttc                           >  2:1403007/1‑47 (MQ=255)
                                                                                                                                                    |                                                                     
GCGGTGGTGCAGTCGGGATCTGGTGGGGGCTGGCGCTGGGGCTGGCATGTGCGGCGGTGGCGCTGACCTTTGGCTTTGAGTGGCGGATGAAACGGTTGTTGGGTAAGGCGGGGGTTCGTACAGAAGCTGCTGTTTCGGCCTGACTTCCGGGCCTCTTCGCGGGCACGCCCGCTCCCACAGGATTGCGCGGTCCCTGTGGGAGCGGGCGTGCCCGCGAA  >  NC_002947/6009017‑6009234

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.