Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947 6,098,326 (CAAGCTGCG)2→1 coding (811‑819/867 nt) PP_5350 ← RpiR family transcriptional regulator

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 6098315 6098323 9 147 [0] [0] 149 PP_5350 RpiR family transcriptional regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 6098324 =0 (0.000)130 (1.370) 89/246 0.0 100% coding (821/867 nt) PP_5350 RpiR family transcriptional regulator
?NC_002947 = 6098314 0 (0.000)coding (831/867 nt) PP_5350 RpiR family transcriptional regulator

Only 100 of 149 total aligned reads displayed.

TTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGACGCAAGCTGCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGGTGTCTTCATGCACGTCGATC  >  NC_002947/6098175‑6098473
                                                                                                                                                     |                                                                                                                                                     
accggcctcttcgcgggcttgccccgttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagac                                                                                                                                                       >  2:1742434‑M1/150‑150 (MQ=255)
accggcctcttcgcgggcttgccccgttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagac                                                                                                                                                       >  1:1490036‑M1/150‑150 (MQ=255)
 ccggcctcttcgcgggcttgccccgttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggacagttcaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCg                                                                                                                                                      <  1:2428152‑M1/2‑1 (MQ=255)
  cggcctcttcgcgggcttgccccgttcacacaggaattgcatcgattgatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGc                                                                                                                                                     <  2:94447‑M1/3‑1 (MQ=255)
  cggcctcttcgcgggcttgccccgttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGc                                                                                                                                                     <  1:263751‑M1/3‑1 (MQ=255)
  cagcctcgtagcgggctggcccctgtcacacaggaatgtcacgggtttgtagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGc                                                                                                                                                     <  2:731758‑M1/3‑1 (MQ=255)
     cctcttcgcgggcttgccccgttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAg                                                                                                                                                  <  2:2333781‑M1/6‑1 (MQ=255)
      ctcttcgcgggcttgccccgttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGc                                                                                                                                                 <  1:1002950‑M1/7‑1 (MQ=255)
      cgcttagcgggtttggcccgttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGc                                                                                                                                                 <  2:742615‑M1/7‑1 (MQ=255)
       tcttcgcgggcttgccccgttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCt                                                                                                                                                >  1:2355716‑M1/143‑150 (MQ=255)
       tcttcgcgggctggccccgttcacacaggaattgaaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCt                                                                                                                                                >  2:537306‑M1/143‑150 (MQ=255)
         ttcgcgggcttgccccgttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGc                                                                                                                                              >  1:338890‑M1/141‑150 (MQ=255)
         ttcgcgggcttgccccgttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGc                                                                                                                                              <  2:1497046‑M1/10‑1 (MQ=255)
            gcgggcttgccccgttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGtt                                                                                                                                           <  1:281803‑M1/13‑1 (MQ=255)
                 cttgccccgttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACg                                                                                                                                      <  2:2045025‑M1/18‑1 (MQ=255)
                      cccgttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTcacgcccat                                                                                                                                 <  1:829912‑M1/23‑5 (MQ=255)
                         gttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAg                                                                                                                              <  1:2174741‑M1/26‑1 (MQ=255)
                         gttcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAg                                                                                                                              >  1:473064‑M1/125‑150 (MQ=255)
                           tcacacaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAggt                                                                                                                            >  2:1002950‑M1/123‑150 (MQ=255)
                               acatgaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCaggtggtg                                                                                                                        >  2:1718417‑M1/119‑149 (MQ=255)
                               acaggaattgcaccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGtt                                                                                                                        <  1:1974297‑M1/32‑1 (MQ=255)
                                      ttgcaccgctttctagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAgg                                                                                                                 <  2:2243827‑M1/39‑1 (MQ=255)
                                          accgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAg                                                                                                             <  2:357596‑M1/43‑1 (MQ=255)
                                           ccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGctc                                                                                                                                   <  2:1332775‑M1/21‑1 (MQ=255)
                                           ccgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGctc                                                                                                                                   >  1:1332775‑M1/107‑127 (MQ=255)
                                            cgatttatagaagtgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGc                                                                                                           <  2:213165‑M1/45‑1 (MQ=255)
                                                         tgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAg                                                                                                                              <  2:1086154‑M1/26‑1 (MQ=255)
                                                         tgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAg                                                                                                                              >  1:1086154‑M1/93‑118 (MQ=255)
                                                         tgcacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGATCTTCAGGTGGTTGACCAGGCTAGGCCAGCGCGCCATgg                                                                                              <  1:2404387‑M1/58‑1 (MQ=255)
                                                           cacagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGAc                                                                                                                     >  1:1019172‑M1/91‑125 (MQ=255)
                                                            acagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGc                                                                                                           <  2:1607871‑M1/45‑1 (MQ=255)
                                                            acagtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCaa                                                                                           <  2:447400‑M1/61‑1 (MQ=255)
                                                               gtacctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTATTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGc                                                                                        <  2:275150‑M1/64‑1 (MQ=255)
                                                                  cctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGccc                                                                                                         >  1:691207‑M1/84‑130 (MQ=255)
                                                                  cctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGccc                                                                                                         <  2:691207‑M1/47‑1 (MQ=255)
                                                                   ctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGTAACGCCCAt                                                                                    >  2:1186322‑M1/83‑150 (MQ=255)
                                                                   ctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCAt                                                                                    >  2:281803‑M1/83‑150 (MQ=255)
                                                                   ctgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCAt                                                                                    <  1:1362655‑M1/68‑1 (MQ=255)
                                                                    tgtgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATg                                                                                   >  2:2174741‑M1/82‑150 (MQ=255)
                                                                      tgggagcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGc                                                                                 <  1:2367855‑M1/71‑1 (MQ=255)
                                                                      ggggagcgggcaagcccgagaaaaggccagtaccggttgacttcagtagtcggtagccttgatcatcttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCAGCGCGCCATGGCAACGCCCATGGc                                                                                 >  2:2404387‑M1/80‑150 (MQ=255)
                                                                           gcgggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCa                                                                                                                               >  2:263374‑M1/75‑99 (MQ=255)
                                                                             gggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACg                                                                          >  1:1725404‑M1/73‑150 (MQ=255)
                                                                              ggcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGt                                                                         <  2:1022004‑M1/79‑1 (MQ=255)
                                                                               gcaagcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTc                                                                        >  1:731758‑M1/71‑150 (MQ=255)
                                                                                  agcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagcAGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGAt                                                                     >  1:158545‑M1/68‑150 (MQ=255)
                                                                                  agcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGAt                                                                     >  1:447400‑M1/68‑150 (MQ=255)
                                                                                   gcccgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATc                                                                    <  1:425014‑M1/84‑1 (MQ=255)
                                                                                      cgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCAt                                                                                    >  1:1994494‑M1/64‑131 (MQ=255)
                                                                                      cgcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCAt                                                                                    <  2:1994494‑M1/68‑1 (MQ=255)
                                                                                       gcgaacaggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATcacca                                                                <  2:2143957‑M1/88‑1 (MQ=255)
                                                                                             aggccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGt                                                          >  1:2244201‑M1/57‑150 (MQ=255)
                                                                                               gccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAAc                                                                                          >  2:593517‑M1/55‑116 (MQ=255)
                                                                                               gccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAAc                                                                                          <  1:593517‑M1/62‑1 (MQ=255)
                                                                                               gccagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTgg                                                        >  1:1076614‑M1/55‑150 (MQ=255)
                                                                                                 cagtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGc                                                      <  1:982645‑M1/98‑1 (MQ=255)
                                                                                                   gtacaggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCaa                                                    >  1:1254485‑M1/51‑150 (MQ=255)
                                                                                                    tacaggttgaattcagtcgtcgctagccttgatcgacttgggcaacagtCGCAAGCTACGCTTCCCGCTCTTCCGGTGGCTGACCCGCCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCCGCACGTCGATCCCCACCAGGTGGGCAAt                                                   <  2:1818368‑M1/101‑1 (MQ=255)
                                                                                                        ggttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATAcgc                                               >  1:213165‑M1/46‑150 (MQ=255)
                                                                                                         gttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATAcgcg                                              <  1:2182831‑M1/106‑1 (MQ=255)
                                                                                                          ttgaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCGCGGCGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGa                                             >  1:2037498‑M1/44‑150 (MQ=255)
                                                                                                            gaattcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAgg                                           <  2:2172470‑M1/109‑1 (MQ=255)
                                                                                                               ttcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCAt                                                                                                >  1:1753745‑M1/39‑94 (MQ=255)
                                                                                                               ttcagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCa                                        <  2:1606496‑M1/112‑1 (MQ=255)
                                                                                                                 cagtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGt                                      >  1:1880637‑M1/37‑150 (MQ=255)
                                                                                                                   gtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAg                                                                                                                              >  1:1957334‑M1/35‑60 (MQ=255)
                                                                                                                   gtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAg                                                                                                                              <  2:1957334‑M1/26‑1 (MQ=255)
                                                                                                                   gtcgtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCAccacca                                                             >  1:544837‑M1/35‑125 (MQ=255)
                                                                                                                      gtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGgt                                 <  2:890498‑M1/119‑1 (MQ=255)
                                                                                                                      gtcggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGgt                                 >  1:214868‑M1/32‑150 (MQ=255)
                                                                                                                         ggtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTa                              <  2:1445373‑M1/122‑1 (MQ=255)
                                                                                                                          gtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTc                                                                        >  2:36650‑M1/28‑107 (MQ=255)
                                                                                                                          gtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTc                                                                        <  1:36650‑M1/80‑1 (MQ=255)
                                                                                                                          gtagccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGAGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAg                             <  1:1429487‑M1/123‑1 (MQ=255)
                                                                                                                             gccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGAtc                          <  1:1537437‑M1/126‑1 (MQ=255)
                                                                                                                              ccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTggg                                   <  1:121050‑M1/117‑1 (MQ=255)
                                                                                                                              ccttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGAtct                         <  1:1430646‑M1/127‑1 (MQ=255)
                                                                                                                               cttgatcgacttgggcgaccgcCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGAgctc                        >  2:682046‑M1/23‑150 (MQ=255)
                                                                                                                               cttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGAtctc                        <  1:1833655‑M1/128‑1 (MQ=255)
                                                                                                                               cttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTATTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGAtctc                        <  1:1831271‑M1/128‑1 (MQ=255)
                                                                                                                                ttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCg                       <  1:1110418‑M1/129‑1 (MQ=255)
                                                                                                                                ttgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCg                       >  1:1606496‑M1/22‑150 (MQ=255)
                                                                                                                                ttgagcgactggggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCg                       >  1:742615‑M1/22‑150 (MQ=255)
                                                                                                                                 tgatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCgg                      >  2:1199157‑M1/21‑150 (MQ=255)
                                                                                                                                  gatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTTTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGgt                     >  1:2045025‑M1/20‑150 (MQ=255)
                                                                                                                                  gatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGgt                     >  1:2333781‑M1/20‑150 (MQ=255)
                                                                                                                                  gatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGgt                     >  1:1148274‑M1/20‑150 (MQ=255)
                                                                                                                                  gatcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGgt                     >  1:890498‑M1/20‑150 (MQ=255)
                                                                                                                                   atcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAAt                                                   <  2:1782456‑M1/101‑1 (MQ=255)
                                                                                                                                   atcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAAt                                                   >  1:1782456‑M1/19‑119 (MQ=255)
                                                                                                                                   atcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGgtg                    >  1:1497046‑M1/19‑150 (MQ=255)
                                                                                                                                    tcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATg                                                                                   >  1:168410‑M1/18‑86 (MQ=255)
                                                                                                                                    tcgacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATg                                                                                   <  2:168410‑M1/69‑1 (MQ=255)
                                                                                                                                      gacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCtcggtggct                 <  2:565712‑M1/135‑4 (MQ=255)
                                                                                                                                      gacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGGTGTCt                 >  2:1868558‑M1/16‑150 (MQ=255)
                                                                                                                                      gacttgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGGTGTCt                 >  1:1022004‑M1/16‑150 (MQ=255)
                                                                                                                                          tgggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGGTGTCTTCAt             >  2:1730620‑M1/12‑150 (MQ=255)
                                                                                                                                            ggcgacagaCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGGTGTCTTCATGc           >  1:1535743‑M1/10‑150 (MQ=255)
                                                                                                                                                    aCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGGTGCCTTCATGCACGTCGAt   <  1:265007‑M1/149‑1 (MQ=255)
                                                                                                                                                     CGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGGTGTCTTCATGCACGTCGATc  >  2:1297182‑M1/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
TTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGCAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGACGCAAGCTGCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGGTGTCTTCATGCACGTCGATC  >  NC_002947/6098175‑6098473

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑