Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_002947 6,098,326 (CAAGCTGCG)2→1 coding (811‑819/867 nt) PP_5350 ← RpiR family transcriptional regulator

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_002947 6098315 6098323 9 123 [0] [0] 124 PP_5350 RpiR family transcriptional regulator

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 6098324 =0 (0.000)114 (1.700) 87/248 0.0 100% coding (821/867 nt) PP_5350 RpiR family transcriptional regulator
?NC_002947 = 6098314 0 (0.000)coding (831/867 nt) PP_5350 RpiR family transcriptional regulator

Only 100 of 123 total aligned reads displayed.

ACCGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGACGCAAGCTGCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGGTGTCTT  >  NC_002947/6098166‑6098459
                                                                                                                                                     |                                                                                                                                                 
aCCGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAc                                                                                                                                                  >  1:775121‑M2/1‑149 (MQ=255)
  cGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgc                                                                                                                                                <  1:1752147‑M2/150‑4 (MQ=255)
    gCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCGGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaa                                                                                                                                              >  2:1675715‑M2/1‑145 (MQ=255)
    gCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaa                                                                                                                                              >  1:101700‑M2/1‑145 (MQ=255)
     ccTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaag                                                                                                                                             >  1:405136‑M2/1‑144 (MQ=255)
       tctTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagct                                                                                                                                           <  1:888633‑M2/150‑9 (MQ=255)
         ttCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgc                                                                                                                                         >  1:625952‑M2/1‑140 (MQ=255)
            gcgGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgt                                                                                                                                       <  1:214963‑M2/149‑13 (MQ=255)
            gcgGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgt                                                                                                                                       >  2:214963‑M2/1‑137 (MQ=255)
            gcgGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTGTGTCGACAGAcgcaagctgcgtt                                                                                                                                      <  2:1687546‑M2/150‑14 (MQ=255)
                  ttGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgc                                                                                                                                >  1:803875‑M2/1‑131 (MQ=255)
                    gCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctc                                                                                                                              <  1:1399619‑M2/150‑22 (MQ=255)
                     ccccGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctct                                                                                                                             <  2:56417‑M2/150‑23 (MQ=255)
                       ccGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttc                                                                                                                           >  2:1591919‑M2/1‑126 (MQ=255)
                       ccGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttc                                                                                                                           <  1:1591919‑M2/150‑25 (MQ=255)
                         gTTCACACAGGAATTGCACAGATTTATAGCAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcag                                                                                                                         >  1:1433184‑M2/1‑124 (MQ=255)
                             acacaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGACACAGG‑GAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTGGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtgg                                                                                                                     <  1:1197780‑M2/150‑31 (MQ=255)
                              cacaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggt                                                                                                                    >  2:888633‑M2/1‑119 (MQ=255)
                               acaGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggtt                                                                                                                   >  2:77121‑M2/1‑118 (MQ=255)
                                caGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgttt                                                                                                                                     >  1:328787‑M2/1‑117 (MQ=255)
                                caGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgttt                                                                                                                                     <  2:328787‑M2/131‑15 (MQ=255)
                                 aGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttga                                                                                                                 <  1:1327356‑M2/150‑35 (MQ=255)
                                 aGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttga                                                                                                                 <  1:383481‑M2/150‑35 (MQ=255)
                                  ggAATTGCACCAATTTATAGAAGTGCACAGTACCTGTGGGAGCGGGGCAAGTTC‑CGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgac                                                                                                                >  1:1262105‑M2/1‑115 (MQ=255)
                                    aaTTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgacca                                                                                                              >  1:1689759‑M2/1‑113 (MQ=255)
                                       tGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggc                                                                                                           >  2:1283326‑M2/1‑110 (MQ=255)
                                        gCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggct                                                                                                          <  2:1287098‑M2/150‑42 (MQ=255)
                                         cACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CCAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACGTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggcta                                                                                                         <  1:1680218‑M2/150‑43 (MQ=255)
                                          aCCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctag                                                                                                        <  2:1592677‑M2/150‑44 (MQ=255)
                                          aCCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtg                                                                                                                      >  2:677114‑M2/1‑107 (MQ=255)
                                          aCCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtg                                                                                                                      <  1:677114‑M2/136‑30 (MQ=255)
                                          aCCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGAG‑CATGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcagctggttgaccaggctag                                                                                                        >  2:109307‑M2/1‑107 (MQ=255)
                                              aTTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggccc                                                                                                    >  2:1593099‑M2/1‑103 (MQ=255)
                                                  ataGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcc                                                                                                     <  1:693260‑M2/145‑47 (MQ=255)
                                                      aaGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgcca                                                                                            <  2:1312520‑M2/150‑56 (MQ=255)
                                                        gTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgt                                                                                                                                       >  1:528632‑M2/1‑93 (MQ=255)
                                                           cacaGTACCTGTGGGAGCGGG‑CAAGACATCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggca                                                                                       <  1:1366065‑M2/150‑61 (MQ=255)
                                                            acaGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaa                                                                                      <  1:1708740‑M2/150‑62 (MQ=255)
                                                            acaGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaa                                                                                      <  1:754372‑M2/150‑62 (MQ=255)
                                                             caGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaac                                                                                     <  2:808030‑M2/150‑63 (MQ=255)
                                                                tACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcc                                                                                  >  1:382961‑M2/1‑85 (MQ=255)
                                                                   cTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccat                                                                               <  1:23085‑M2/150‑69 (MQ=255)
                                                                     gtgGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatgg                                                                             >  2:736702‑M2/1‑80 (MQ=255)
                                                                      tgGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgacca                                                                                                              <  1:42176‑M2/116‑38 (MQ=255)
                                                                      tgGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgacca                                                                                                              >  2:42176‑M2/1‑79 (MQ=255)
                                                                        ggCGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggcca                                                                          >  2:1325720‑M2/1‑77 (MQ=255)
                                                                        ggAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggcca                                                                          >  2:1399619‑M2/1‑77 (MQ=255)
                                                                         gAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccag                                                                         <  1:893491‑M2/150‑75 (MQ=255)
                                                                          aGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagc                                                                        <  1:286018‑M2/150‑76 (MQ=255)
                                                                          aGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagc                                                                        >  2:1752147‑M2/1‑75 (MQ=255)
                                                                              gg‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgt                                                                    <  2:120490‑M2/150‑80 (MQ=255)
                                                                               g‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtc                                                                   >  1:210087‑M2/1‑70 (MQ=255)
                                                                               g‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgcca                                                                                            >  2:1549314‑M2/1‑70 (MQ=255)
                                                                               g‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgcca                                                                                            <  1:1549314‑M2/125‑56 (MQ=255)
                                                                                    gCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatc                                                               >  2:23085‑M2/1‑66 (MQ=255)
                                                                                    gCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatc                                                               >  1:1592677‑M2/1‑66 (MQ=255)
                                                                                      ccGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcac                                                             <  2:741910‑M2/150‑87 (MQ=255)
                                                                                      ccGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcac                                                             <  1:1696743‑M2/150‑87 (MQ=255)
                                                                                      ccGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccat                                                                               >  1:1434578‑M2/1‑64 (MQ=255)
                                                                                      ccGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccat                                                                               <  2:1434578‑M2/132‑69 (MQ=255)
                                                                                       cgcgAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttaactgctttttgcccgcgcgccatggcaacgcccatggccagcacgtcgatcacc                                                            >  1:761029‑M2/1‑63 (MQ=255)
                                                                                                gCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatctccaccaggtgg                                                   <  1:1149057‑M2/150‑97 (MQ=255)
                                                                                                gCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgg                                                   >  2:1708740‑M2/1‑54 (MQ=255)
                                                                                                gCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcga                                                                 <  2:1614093‑M2/136‑83 (MQ=255)
                                                                                                gCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcga                                                                 >  1:1614093‑M2/1‑54 (MQ=255)
                                                                                                     tACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGTCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaat                                              >  2:112494‑M2/1‑49 (MQ=255)
                                                                                                     tACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaat                                              >  2:893491‑M2/1‑49 (MQ=255)
                                                                                                       cAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatac                                            >  2:1327356‑M2/1‑47 (MQ=255)
                                                                                                         ggTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgc                                          >  2:398989‑M2/1‑45 (MQ=255)
                                                                                                          gTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccac                                                          >  1:1358558‑M2/1‑44 (MQ=255)
                                                                                                          gTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcag                                                                                                                         >  1:948207‑M2/1‑44 (MQ=255)
                                                                                                           ttGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcga                                        >  1:383599‑M2/1‑43 (MQ=255)
                                                                                                              aaTTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggt                                     >  1:808030‑M2/1‑40 (MQ=255)
                                                                                                               aTTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcaggctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtc                                    <  1:1251688‑M2/150‑112 (MQ=255)
                                                                                                                ttCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggcta                                                                                                         <  1:1205126‑M2/80‑43 (MQ=255)
                                                                                                                ttCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggcta                                                                                                         >  2:1205126‑M2/1‑38 (MQ=255)
                                                                                                                   aGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtg                                <  1:48152‑M2/150‑116 (MQ=255)
                                                                                                                   aGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtg                                <  2:942357‑M2/150‑116 (MQ=255)
                                                                                                                       gtcgGTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcatgtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggt                            >  2:1641111‑M2/1‑31 (MQ=255)
                                                                                                                          ggTATCCTTGTGCTACTGGGGCGACAGAcgcaagctgcgtttcaggctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgta                         >  2:1251688‑M2/1‑28 (MQ=255)
                                                                                                                           gTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatgg                                                                                         >  1:601364‑M2/1‑27 (MQ=255)
                                                                                                                           gTAGCCTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatgg                                                                                         <  2:601364‑M2/85‑59 (MQ=255)
                                                                                                                               ccTTGATCGACTTGGGCGACAGAcgcaagctgcgattcaagatcttaagatggttgaccaggctaggccgacgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatct                    <  1:746968‑M2/150‑128 (MQ=255)
                                                                                                                                cTTGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctc                   >  2:383986‑M2/1‑22 (MQ=255)
                                                                                                                                 ttGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcg                  >  1:741910‑M2/1‑21 (MQ=255)
                                                                                                                                 ttGATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcg                  >  1:837605‑M2/1‑21 (MQ=255)
                                                                                                                                   gATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt                <  2:885284‑M2/150‑132 (MQ=255)
                                                                                                                                   gATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt                >  2:628620‑M2/1‑19 (MQ=255)
                                                                                                                                   gATCGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggt                >  1:890392‑M2/1‑19 (MQ=255)
                                                                                                                                      cGACTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtc             >  1:942357‑M2/1‑16 (MQ=255)
                                                                                                                                         cTTGGGCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttc          <  2:1190547‑M2/150‑138 (MQ=255)
                                                                                                                                             ggCGACAGAcgcaagctgcgtttcacgctcttccggtggttggcaaggctaggggcgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcgtcatgc      >  2:1260803‑M2/1‑9 (MQ=255)
                                                                                                                                             ggCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcacca                                                           <  1:302421‑M2/97‑89 (MQ=255)
                                                                                                                                             ggCGACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcacca                                                           >  2:302421‑M2/1‑9 (MQ=255)
                                                                                                                                                gACAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttcatgcacg   >  2:286018‑M2/1‑6 (MQ=255)
                                                                                                                                                 aCAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttcatgcacgt  >  2:1149057‑M2/1‑5 (MQ=255)
                                                                                                                                                 aCAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttcatgc      >  1:1478850‑M2/1‑5 (MQ=255)
                                                                                                                                                 aCAGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgggcaatacgcgaggtcagtggggtgtagatctcggtgtcttcatgc      <  2:1478850‑M2/146‑142 (MQ=255)
                                                                                                                                                   aGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgg                                                   <  2:627369‑M2/99‑97 (MQ=255)
                                                                                                                                                   aGAcgcaagctgcgtttcacgctcttcaggtggttgaccaggctaggcccgcgcgccatggcaacgcccatggccagcacgtcgatcaccaccaggtgg                                                   >  1:627369‑M2/1‑3 (MQ=255)
                                                                                                                                                     |                                                                                                                                                 
ACCGGCCTCTTCGCGGGCTTGCCCCGTTCACACAGGAATTGCACCGATTTATAGAAGTGCACAGTACCTGTGGGAGCGGG‑CAAGCCCGCGAACAGGCCAGTACAGGTTGAATTCAGTCGTCGGTAGCCTTGATCGACTTGGGCGACAGACGCAAGCTGCGCAAGCTGCGTTTCACGCTCTTCAGGTGGTTGACCAGGCTAGGCCCGCGCGCCATGGCAACGCCCATGGCCAGCACGTCGATCACCACCAGGTGGGCAATACGCGAGGTCAGTGGGGTGTAGATCTCGGTGTCTT  >  NC_002947/6098166‑6098459

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑