Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,184,5910GC34.6% 34.6 / 20.6 26intergenic (‑201/‑211)mltF/purLmembrane‑bound lytic murein transglycosylase F/phosphoribosylformylglycinamidine synthase
Reads supporting (aligned to +/- strand):  ref base G (7/10);  new base C (6/3);  total (13/13)
Fisher's exact test for biased strand distribution p-value = 4.11e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

TTGTCTGGTAGCGGGTTGTGTGGTTGGGGGAGGGGGGATTGCATCAGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTAGAGCAGGTGC  >  NC_002947/1184444‑1184733
                                                                                                                                                   |                                                                                                                                              
ttGTCTGGTAGCGGGTTGTGTGGTTGGGGGAGGGGGGATTGCATCAGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCcgcgcg                                                                                                                                              >  1:932705/1‑150 (MQ=255)
ttGTCTGGTAGCGGGTTGTGTGGTTGGGGGAGGGGGGATTGCATCAGGGCTGCCAGGTGGCCGGATTGAGCTCTCGATCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCcgcgcg                                                                                                                                              <  1:1091285/150‑1 (MQ=38)
            gggTTGTGTGGTTGGGGGAGGGGGGATTGCATCAGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGa                                                                                                                                  <  2:1662827/150‑1 (MQ=255)
              gTTGTGTGGTTGGGGGAGGGGGGATTGCATCAGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCgctcgctc                                                                                                                                <  1:1755902/150‑1 (MQ=255)
                      gTTGGGGGAGGGGGGATTGCATCAGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGgc                                                                                                                        <  1:15013/150‑1 (MQ=255)
                                        ccATCAGGGCTGCCATGTAGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTTTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCg                                                                                                      <  1:707769/149‑1 (MQ=255)
                                                  tGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTgcg                                                                                            <  2:932705/150‑1 (MQ=255)
                                                                                       gaTCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCgcggg                                                                                                                                            >  1:110640/1‑65 (MQ=255)
                                                                                       gaTCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCgcggg                                                                                                                                            <  2:110640/65‑1 (MQ=255)
                                                                                           gAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGa                                                                                                                                  >  2:920072/1‑71 (MQ=255)
                                                                                           gAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGa                                                                                                                                  <  1:920072/71‑1 (MQ=255)
                                                                                            aGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGAc                                                  >  1:133179/1‑150 (MQ=255)
                                                                                                       gtgtCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTgcg                                                                                            <  2:456400/97‑1 (MQ=255)
                                                                                                       gtgtCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTgcg                                                                                            >  1:456400/1‑97 (MQ=255)
                                                                                                          tCCGCCTTAAGATATTCCGCGCCTATGGGGTCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGTACAGTGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTAACCCCGAAGTCCGGtt                                    <  1:1352579/150‑1 (MQ=38)
                                                                                                            cGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCg                                                                               >  1:1753288/1‑105 (MQ=255)
                                                                                                            cGCCTTAAGATACTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCg                                                                               <  2:1753288/105‑1 (MQ=255)
                                                                                                                                   tGAGATCGAGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTag           >  2:836844/1‑150 (MQ=255)
                                                                                                                                   tGAGATCGAGCGCCGCCCGCGCGGCGCTCAATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGCCGGACACCTCTGaaaa                                                       <  2:1623017/106‑1 (MQ=37)
                                                                                                                                   tGAGATCGAGCGCCGCCCGCGCGGCGCTCAATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGCCGGACACCTCTGaaaa                                                       >  1:1623017/1‑106 (MQ=37)
                                                                                                                                    gagaTCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTaga          >  1:1615008/1‑150 (MQ=255)
                                                                                                                                        tCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGCCGGACACCTCTGaaaa                                                       >  1:1441215/1‑101 (MQ=255)
                                                                                                                                        tCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGCCGGACACCTCTGaaaa                                                       <  2:1441215/101‑1 (MQ=255)
                                                                                                                                        tCGAGCGCCGCCCGCGCGGCGCTCGATCTCATAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGcc                                                                      >  2:1521439/1‑86 (MQ=21)
                                                                                                                                        tCGAGCGCCGCCCGCGCGGCGCTCGATCTCATAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGcc                                                                      <  1:1521439/86‑1 (MQ=21)
                                                                                                                                          gAGCGCCGCCCGCGCGGCGATCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTAGAGCAGGt    >  2:1034750/1‑150 (MQ=255)
                                                                                                                                           aGCGCCGCCCGCGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTAGAGCAGGTg   >  2:1613455/1‑150 (MQ=255)
                                                                                                                                            gcgcCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTAGAGCAGGTGc  >  1:406443/1‑150 (MQ=255)
                                                                                                                                            gcgcCGCCCGCGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCt                                                                                       <  1:1512113/65‑1 (MQ=25)
                                                                                                                                            gcgcCGCCCGCGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCt                                                                                       >  2:1512113/1‑65 (MQ=25)
                                                                                                                                                   |                                                                                                                                              
TTGTCTGGTAGCGGGTTGTGTGGTTGGGGGAGGGGGGATTGCATCAGGGCTGCCAGGTGGCCGGCTTGAGATATTCAGCGCCTGTGAGATCGAGCGCCGCCAGGTGTCCGCCTTAAGATATTCAGCGCCTATGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCAGAATGTGTCGAGCCGGACACCTGCGGCGCTCGATCTCGTCTCAAGCCGGACACCTCTGAAAACTGACCCCGAAGTCCGGTTCCGCCGCCCGGCAGGCGTGGCTTAGAGCAGGTGC  >  NC_002947/1184444‑1184733

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: