| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,976,030 | Δ1 bp | 5.4% | coding (919/1104 nt) | pheA → | bifunctional chorismate mutase/prephenate dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,976,030 | 0 | C | . | 5.4% | 335.0 / 14.0 | 112 | coding (919/1104 nt) | pheA | bifunctional chorismate mutase/prephenate dehydratase |
| Reads supporting (aligned to +/- strand): ref base C (55/48); new base . (4/2); total (60/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.85e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.86e-01 | |||||||||||
Only 100 of 112 total aligned reads displayed.
GATCGAAGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCG > NC_002947/1975885‑1976176 | gaTCGAAGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGaa > 1:486106/1‑150 (MQ=255) aTCGAAGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAAc > 1:1638113/1‑150 (MQ=255) caGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCa > 2:2971789/2‑150 (MQ=255) aaGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGATGGTGCCGTTCT‑ATCAGAACGGCa < 2:89617/150‑1 (MQ=255) aGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCAt < 1:2975438/150‑1 (MQ=255) ccgccgGGACAAATCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGa < 1:1679733/150‑1 (MQ=255) ccGCCCGGACAACTCCACTCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGATGCCGTTCT‑GATAGAACGGCaccag < 1:615248/150‑5 (MQ=255) ccGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGACGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGa > 1:941063/1‑150 (MQ=255) cGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGAc < 2:857679/150‑1 (MQ=255) cccGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGaa < 2:1169540/138‑1 (MQ=255) cccGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGaa > 1:1169540/1‑138 (MQ=255) cccGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCt < 2:2740299/150‑1 (MQ=255) cGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGa < 1:78395/150‑1 (MQ=255) aCAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGTCGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGAccc > 1:1070221/1‑150 (MQ=255) cTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGAc < 2:1494481/139‑1 (MQ=255) cTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTAACGCCAACCGGAGCAGCCAAGACCTCGATTATCGTGTCAATGTGCAACAAGCCATGTGCTTTGCATGTGTTGCTGTTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCAt < 2:344563/150‑1 (MQ=255) tCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCTACGTGACCCGCATc > 1:632666/1‑150 (MQ=255) tCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGAcc > 2:854819/1‑144 (MQ=255) tCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGAcc < 1:854819/144‑1 (MQ=255) tCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATc > 1:350491/1‑150 (MQ=255) tCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATc < 2:941063/150‑1 (MQ=255) tCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATc < 1:2614845/150‑1 (MQ=255) cACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCTGAT‑AGAACGGc > 1:1681831/1‑130 (MQ=255) cACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCTGAT‑AGAACGGc < 2:1681831/130‑1 (MQ=255) tCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGAc > 2:973246/1‑145 (MQ=255) tCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGAc < 1:973246/145‑1 (MQ=255) tgatgaTCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGt > 2:436417/1‑150 (MQ=255) gatCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTcgcg > 2:627840/1‑150 (MQ=255) aCCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCa > 1:735686/1‑150 (MQ=255) ccAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCaa < 1:436417/150‑1 (MQ=255) aGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGAc < 2:548179/110‑1 (MQ=255) aGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGAc > 1:548179/1‑110 (MQ=255) ggAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTc > 2:367767/1‑135 (MQ=255) ggAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTc < 1:367767/135‑1 (MQ=255) ccgccgACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGc < 1:89491/138‑1 (MQ=255) ccgccgACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGc > 2:89491/1‑138 (MQ=255) ccgccgACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCACAGCGGCAAGTGGACCTAc < 2:2922255/150‑1 (MQ=255) cgccgACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACCAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACg > 1:896037/1‑150 (MQ=255) cgccgACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTAc > 2:656317/1‑149 (MQ=255) cgccgACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTAc < 1:656317/149‑1 (MQ=255) ccgACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACgtg < 1:1017809/150‑1 (MQ=255) cGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGttctt > 2:776006/1‑150 (MQ=255) gcctgcAAGACCTTGATCATCGGTTGGATGACCAACAAGCCAGGTGCTTTGCATGTGTTGCTTGTGCCGTTCT‑ATCAGAACGGCATCTACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTCGACCTGCGGGTTCTTCATc < 2:212242/145‑1 (MQ=255) gacgacAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATc > 2:2564540/1‑150 (MQ=255) gacAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGAc < 2:21478/87‑1 (MQ=255) gacAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGAc > 1:21478/1‑87 (MQ=255) gacAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCaa > 1:2992188/1‑125 (MQ=255) gacAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCaa < 2:2992188/125‑1 (MQ=255) acAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACt < 1:627840/150‑1 (MQ=255) aCCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGttc < 1:754808/135‑1 (MQ=255) aCCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGttc > 2:754808/1‑135 (MQ=255) aCCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTtcgtc < 2:1070221/150‑1 (MQ=255) tCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGc > 2:2027012/1‑150 (MQ=255) tCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGc < 2:311191/75‑1 (MQ=255) tCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGc > 1:311191/1‑75 (MQ=255) aGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCg < 1:2084538/94‑1 (MQ=255) aGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCg > 2:2084538/1‑94 (MQ=255) caacaaGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGAt > 2:512814/1‑150 (MQ=255) caacaaGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGAt < 2:632666/150‑1 (MQ=255) aacaaGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTc > 2:1464901/1‑83 (MQ=255) aacaaGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTc < 1:1464901/83‑1 (MQ=255) aacaaGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATc < 1:2027012/150‑1 (MQ=255) aacaaGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATc > 1:1016381/1‑150 (MQ=255) acaaGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCTCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCTCTACCCGCTGATCa > 1:2159551/1‑150 (MQ=255) caaGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCaa < 2:1650548/150‑1 (MQ=255) caaGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCaa < 2:1638113/150‑1 (MQ=255) gCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGc > 2:1805605/1‑150 (MQ=255) ccAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ACCAGAACCCCAAAGCCCTCACCCTCACCGAGACCTATCCGTCTCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCg < 2:2647220/150‑1 (MQ=255) cAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCAAGAACTGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCgg < 1:2971789/150‑1 (MQ=255) aGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGt < 2:1016381/150‑1 (MQ=255) tGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGAc < 1:1771453/63‑1 (MQ=255) tGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGAc > 2:1771453/1‑63 (MQ=255) gTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGa > 2:551804/1‑150 (MQ=255) gCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCCAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGcc > 2:867848/1‑149 (MQ=255) aTGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCAt < 2:495258/97‑1 (MQ=255) tGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGAc < 2:1101277/100‑1 (MQ=255) tGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGAc > 1:1101277/1‑100 (MQ=255) ttGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGc > 2:220910/1‑150 (MQ=255) ttGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGc > 1:2642700/1‑150 (MQ=255) gtcgatGCCGTTCTGAT‑AGAACGGCACCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCa > 2:1474534/6‑150 (MQ=255) gCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCa < 1:512814/150‑1 (MQ=255) gatGCCGTTCT‑GATAGAACGGCACCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCagga > 1:2577987/3‑150 (MQ=255) gTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGa < 2:1229424/70‑1 (MQ=255) gTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGa > 1:1229424/1‑70 (MQ=255) atGCCGTTCTGAT‑AGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAg > 2:2713829/2‑138 (MQ=255) atGCCGTTCT‑GATAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAg < 1:2713829/137‑1 (MQ=255) tGCCGTTCTGAT‑AGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCgg > 2:1420063/1‑126 (MQ=255) tGCCGTTCTGAT‑AGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCgg < 1:1420063/126‑1 (MQ=255) tGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCaccacc < 1:2155389/105‑1 (MQ=255) tGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCaccacc > 2:2155389/1‑105 (MQ=255) gCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGccacca < 2:1917260/102‑1 (MQ=255) gCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGccacca > 1:1917260/1‑102 (MQ=255) cGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCtg > 2:2592425/1‑150 (MQ=255) gTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAg < 1:484595/130‑1 (MQ=255) gTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAg > 2:484595/1‑130 (MQ=255) tCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTg < 1:1191451/122‑1 (MQ=255) tCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTg > 2:1191451/1‑122 (MQ=255) tCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTgg < 1:985025/150‑1 (MQ=255) t‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGgcg > 1:1965041/1‑150 (MQ=255) t‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGgcg > 1:2748691/1‑150 (MQ=255) | GATCGAAGACCGCCCGGACAACTCCACGCGCTTCCTGATGATCGGTAACCAGGAAGTACCGCCGACCGGCGACGACAAGACCTCGATCATCGTTTCGATGAGCAACAAGCCAGGTGCGTTGCATGAGTTGCTGGTGCCGTTCT‑ATCAGAACGGCATCGACCTGACCCGCATCGAGACCCGCCCGTCGCGCAGCGGCAAGTGGACCTACGTGTTCTTCATCGACTTCGTCGGCCACCACCGCGACCCGCTGATCAAGGCGGTGCTCGAGCAGATCAGCCAGGAGGCTGTGGCG > NC_002947/1975885‑1976176 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |