| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,798,752 | Δ1 bp | 11.3% | coding (191/831 nt) | PP_3358 ← | hydroxycinnamoyl‑CoA hydratase‑lyase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,798,752 | 0 | T | . | 11.3% | 285.0 / 32.5 | 97 | coding (191/831 nt) | PP_3358 | hydroxycinnamoyl‑CoA hydratase‑lyase |
| Reads supporting (aligned to +/- strand): ref base T (40/46); new base . (6/5); total (46/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.52e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.45e-01 | |||||||||||
CCATGGCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGCGATGCCCGCTTCCAGT > NC_002947/3798606‑3798901 | ccATGGCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGc < 2:784845/150‑1 (MQ=255)ccATGGCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGc < 2:2916442/150‑1 (MQ=255)ccATGGCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGc < 1:2592604/150‑1 (MQ=255) gagCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGGCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCgg < 1:2306113/148‑1 (MQ=255) gCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCa < 2:257969/150‑1 (MQ=255) aTGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCGAGTCCTGGAC‑CGCCGGCatgg < 1:293341/150‑4 (MQ=255) aTGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCg < 1:2090320/150‑1 (MQ=255) ggTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGt < 2:2238702/150‑1 (MQ=255) gTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTc < 1:1154176/150‑1 (MQ=255) cGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCaa < 2:2086139/150‑1 (MQ=255) gTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCGAGTCCTGGAC‑CGCCGGCat < 2:2488379/141‑2 (MQ=255) gTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCGAGTCCTGGAC‑CGCCGGCat > 1:2488379/1‑140 (MQ=255) gTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATa > 2:2908476/1‑150 (MQ=255) gTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATa > 1:2000085/1‑150 (MQ=255) tGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCa < 1:2367668/150‑1 (MQ=255) aCGCAGCAACTTCCATTGCGATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCcagc < 2:795794/150‑1 (MQ=255) gcagcaACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCcagcgt > 1:2592310/1‑150 (MQ=255) agcaACTTCCATTGCCATTGCGAGGCTTCGGGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCcagcgtca > 2:2042939/1‑150 (MQ=255) caACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCcagcgtcagc < 1:482522/150‑1 (MQ=255) ccattgccattgCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTg > 1:304438/1‑150 (MQ=255) attgccattgcGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCt > 1:1600457/1‑150 (MQ=255) ttgccattgcGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCGAGTCCTGGAC‑CGCCGGCat < 1:34191/113‑2 (MQ=255) ttgccattgcGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCGAGTCCTGGAC‑CGCCGGCat > 2:34191/1‑112 (MQ=255) ccattgcGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCaa > 2:444117/1‑149 (MQ=255) ccattgcGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCaa < 1:444117/149‑1 (MQ=255) ccattgcGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAg < 2:7545/150‑1 (MQ=255) cattgcGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAgg < 2:2818854/150‑1 (MQ=255) attgcGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAggg > 2:1953075/1‑150 (MQ=255) cGAGGCTTCGCGACGAATCGTTTCCTGGAGGATTTCCGGGCCGGAGTCCGCCTCGCGGAAATACTAGTCAAGGGCCTTTCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTc < 2:1024113/150‑1 (MQ=255) gAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAgg > 1:1585557/1‑144 (MQ=255) gAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAgg < 2:1585557/144‑1 (MQ=255) gCTCCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGc < 1:47863/150‑1 (MQ=255) cTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCCCCATCGTCCTGCTCAAGGGTTTCCAGCa < 1:1619536/150‑1 (MQ=255) cgacgaATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCCCCGGTCACTACCAGCACGCCAGCGTCAGCGTCCTTCTCAAGGGTTTCCAGCACGTCg < 2:2806882/150‑1 (MQ=255) acgaATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGc > 1:2574703/1‑86 (MQ=255) acgaATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGc < 2:2574703/86‑1 (MQ=255) gaATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCGAGTCCTGGAC‑CGCCGGCa < 1:1208719/89‑1 (MQ=38) gaATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCGAGTCCTGGAC‑CGCCGGCa > 2:1208719/1‑89 (MQ=38) gaATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCCCGTCGcccc > 2:2615376/1‑149 (MQ=255) tCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCAttt < 2:1600457/150‑1 (MQ=255) ttttCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCg < 2:1009270/81‑1 (MQ=255) ttttCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCg > 1:1009270/1‑81 (MQ=255) ttttCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTcc < 2:1956370/150‑1 (MQ=255) ggaggaTTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCTATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGtt > 2:1762584/1‑122 (MQ=255) ggaggaTTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCTATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGtt < 1:1762584/122‑1 (MQ=255) gaggaTTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAg > 2:2074604/1‑117 (MQ=255) gaggaTTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAg < 1:2074604/117‑1 (MQ=255) gaggaTTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAg < 2:555836/150‑1 (MQ=255) aTTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTg > 1:2152843/1‑150 (MQ=255) ttCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTggg < 1:1953075/150‑1 (MQ=255) ttCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTggg > 1:2798910/1‑150 (MQ=255) gggCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTc > 1:2057579/1‑150 (MQ=255) gCGTCGACGTCGCGGAAGTACTAGTTCAGGTCCATGACCGCG‑GTCGAGGACTCGCCGGCACCGGTCAATACCAGAACGCCAGCGTAAGCGTCGTGCGTAAAGGTATCCAGCAAGTCAACCATTTCCCGGTTCAGGGTGGGGCTCATGGCa > 2:1496155/1‑150 (MQ=255) aCCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCaa < 1:2872624/94‑1 (MQ=255) aCCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCaa > 2:2872624/1‑94 (MQ=255) aCCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCCTTTCCCGGTTCAGGGTCGGGCTCATGGCATTGCgg > 2:1002862/1‑149 (MQ=255) aCCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGt > 1:1448077/1‑150 (MQ=255) cTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCcagcgtcag < 2:2013262/80‑1 (MQ=255) cTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCcagcgtcag > 1:2013262/1‑80 (MQ=255) cTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGttt > 1:13706/1‑150 (MQ=255) gcgGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTcc > 2:2524088/1‑97 (MQ=255) gcgGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTcc < 1:2524088/97‑1 (MQ=255) tCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTg > 1:2496765/1‑150 (MQ=255) tCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTg > 1:813705/1‑150 (MQ=255) ccTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGa < 1:1493738/150‑1 (MQ=255) cTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAg < 2:2057579/150‑1 (MQ=255) cTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAg > 2:2752025/1‑150 (MQ=255) cTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAg > 1:1915448/1‑150 (MQ=255) tCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAggg > 2:565788/1‑150 (MQ=255) gTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCAc < 1:2042939/150‑1 (MQ=255) gTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCAc > 1:1583158/1‑150 (MQ=255) gTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCAc > 1:2419200/1‑150 (MQ=255) tCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCAcc > 2:2686250/1‑150 (MQ=255) ccATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCAccc > 1:2100807/1‑150 (MQ=255) ccATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCAccc < 2:2100807/150‑1 (MQ=255) cATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCg > 2:120477/1‑123 (MQ=255) cATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCg < 1:120477/123‑1 (MQ=255) tGCCGGCGAGTCCTGGAC‑CGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAgg > 2:1251480/1‑150 (MQ=255) tGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAgg < 2:1448077/150‑1 (MQ=255) tGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAgg < 1:2908476/150‑1 (MQ=255) ccGGCGAGTCCTGGAC‑CGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTcc < 2:2423822/90‑1 (MQ=38) ccGGCGAGTCCTGGAC‑CGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTcc > 1:2423822/1‑90 (MQ=38) ccGGCGAGTCCTGGAC‑CGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGCg > 1:2075532/1‑150 (MQ=255) ccGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTTCGttt > 2:2794880/1‑122 (MQ=255) ccGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTTCGttt < 1:2794880/122‑1 (MQ=255) ccGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGttttta < 2:621649/125‑2 (MQ=255) ccGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTc > 1:621649/1‑125 (MQ=255) cggcg‑gTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGGCAGCGTGAGCGTCCTGCTAAAGGGTTTCCAGCACGTCGACCATTTCACGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGGGATTGAGGGTCACTCAGGCGa > 2:1448671/1‑150 (MQ=255) ggcg‑gTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGCGAt < 2:1583158/150‑1 (MQ=255) cg‑gTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGCGATGc < 2:304438/150‑1 (MQ=255) g‑gTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGCGATGcc > 1:1804437/1‑150 (MQ=255) aGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCgg > 1:1423378/1‑118 (MQ=255) aGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCgg < 2:1423378/118‑1 (MQ=255) aGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGCGATGCCCGCtt < 1:480391/150‑1 (MQ=255) aGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGAGTCAGCGTCCTGCTCAAGGGTTTTCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGCGATGCCCGCtt > 1:1239969/1‑150 (MQ=255) ggACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGCGATGCCCGCTTc < 2:1804437/150‑1 (MQ=255) ggACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGCGATGCCCGCTTc < 2:2152843/150‑1 (MQ=255) tCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGCGATGCCCGCTTCCAGt > 1:2605758/1‑150 (MQ=255) | CCATGGCGATGGTCGGTTTGGCATACAGACGCAGCAACTTCCATTGCCATTGCGAGGCTTCGCGACGAATCTTTTCCTGGAGGATTTCCGGGCCGGCGTCCACCTCGCGGAAGTACTCCTTCAGGTCCATGCCGGCG‑GTCCAGGACTCGCCGGCACCGGTCAATACCAGCACGCCAGCGTCAGCGTCCTGCTCAAGGGTTTCCAGCACGTCGACCATTTCCCGGTTCAGGGTGGGGCTCATGGCATTGCGTTTTTCCGGGCGATTGAGGGTCACCCAGGCGATGCCCGCTTCCAGT > NC_002947/3798606‑3798901 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |