| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 614,313:1 | +T | 7.1% | intergenic (‑129/+49) | dxs ← / ← ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 614,313 | 1 | . | T | 7.1% | 212.7 / 11.2 | 56 | intergenic (‑129/+49) | dxs/ispA | 1‑deoxyxylulose‑5‑phosphate synthase/farnesyl diphosphate synthase |
| Reads supporting (aligned to +/- strand): ref base . (24/28); new base T (2/2); total (26/30) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.11e-01 | |||||||||||
CTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCG > NC_002947/614164‑614461 | ctctTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCaa < 1:1042605/150‑1 (MQ=255)ctctTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCaa < 2:2681649/150‑1 (MQ=255) ctTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑Ga < 2:2605878/150‑1 (MQ=255) tGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATc < 1:1976032/150‑1 (MQ=255) tGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATc < 1:1769982/150‑1 (MQ=255) cgtgacgccggcctacaacgacgccggctaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATGCGTCGGcaaattcaatgacgca > 1:1216954‑M1/111‑143 (MQ=255) cgtGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTcgc < 2:1943476/150‑1 (MQ=255) tGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCgg < 2:954933/150‑1 (MQ=255) tGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCgg < 2:2447284/150‑1 (MQ=255) tGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCgg < 1:1476689/150‑1 (MQ=255) ccggcctacaacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGA‑CGCATTCGCgg > 2:1147372‑M1/104‑150 (MQ=255) ggCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTcgc > 1:628405/1‑139 (MQ=255) ggCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTcgc < 2:628405/139‑1 (MQ=255) aacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctatagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGA‑CGCATTcgc < 1:2416850‑M1/45‑1 (MQ=255) aacgacgccggccaggacaatgcccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctatagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑TGACGCATTcgc > 2:2416850‑M1/95‑139 (MQ=255) ggtataGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCgg < 1:405537/131‑1 (MQ=255) gTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCgg > 2:405537/1‑133 (MQ=255) ccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑TGACGCATTCGCggg < 1:1544882‑M1/48‑1 (MQ=255) ccgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggcgCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑TGACGCATTCGCggg > 2:1544882‑M1/72‑119 (MQ=255) aGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCggg < 2:564044/119‑1 (MQ=255) aGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCggg > 1:564044/1‑119 (MQ=255) cgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggagCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGA‑CGCATTCGCgg < 1:272417‑M1/47‑1 (MQ=255) cgttcgacaccgggcgaaggatttggcgtgtatgccggggtttcctacagcttccgctgacgggtgggagCGGGTTTACCCGCGAATGCGTCGGCAAATTCAATGA‑CGCATTCGCgg > 2:272417‑M1/71‑117 (MQ=255) gcgGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCaa < 1:2820735/50‑1 (MQ=255) gcgGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCaa > 2:2820735/1‑50 (MQ=255) aTCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCt > 1:1689615/1‑150 (MQ=255) aTCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCt > 2:74604/1‑150 (MQ=255) tCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAg > 2:1499571/1‑72 (MQ=255) tCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAg < 1:1499571/72‑1 (MQ=255) tCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCtt > 1:2746288/1‑150 (MQ=255) CGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTg > 2:2746288‑M1/1‑150 (MQ=255) CCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAg < 2:2087316‑M1/63‑1 (MQ=255) CCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAg > 1:2087316‑M1/1‑63 (MQ=255) CCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCgg < 2:2840305‑M1/150‑1 (MQ=255) CCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGtt > 1:1352859‑M1/1‑78 (MQ=255) CCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGtt < 2:1352859‑M1/78‑1 (MQ=255) CCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACACTATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGc < 1:1574034‑M1/150‑1 (MQ=255) CCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAAccc < 2:1814098‑M1/138‑1 (MQ=255) CCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAAccc > 1:1814098‑M1/1‑138 (MQ=255) CCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGc < 1:567670‑M1/150‑1 (MQ=255) CCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGc < 1:1960389‑M1/150‑1 (MQ=255) GCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACCATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCa < 2:416017‑M1/150‑1 (MQ=255) GCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCa < 2:1073823‑M1/150‑1 (MQ=255) GCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCa < 2:2479615‑M1/150‑1 (MQ=255) ATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAgcgc < 2:139087‑M1/150‑1 (MQ=255) GTCGGCAAATTCAA‑GATCGCAGTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTgg < 2:128469‑M1/150‑1 (MQ=255) TCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGt < 2:1342842‑M1/150‑1 (MQ=255) CGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTc > 1:128469‑M1/1‑150 (MQ=255) ggCAAATTCAA‑GATCGCATGCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTcg > 2:2972774/1‑150 (MQ=255) gCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAat > 2:2871529/1‑79 (MQ=255) gCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAat < 1:2871529/79‑1 (MQ=255) aaaTTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCgcgc > 1:44193/1‑150 (MQ=255) aaaTTCAA‑GATCGCATTCGCGGGGAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCgcgc > 1:2587392/1‑150 (MQ=255) aTTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCt < 2:2267423/107‑1 (MQ=255) aTTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCt > 1:2267423/1‑107 (MQ=255) aTTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAgc > 1:141474/1‑136 (MQ=255) aTTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAgc < 2:141474/136‑1 (MQ=255) ttCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTTTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGt > 1:2521932/1‑150 (MQ=255) ttCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGt > 1:2700049/1‑150 (MQ=255) tCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGtt > 2:720232/1‑150 (MQ=255) tCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGtt > 2:822504/1‑150 (MQ=255) aa‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCtttt < 1:1873761/106‑1 (MQ=255) aa‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCtttt > 2:1873761/1‑106 (MQ=255) aa‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCg > 1:527790/1‑150 (MQ=255) aa‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAAAGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCAGAACCCTTGCAGTGCGGCCAGCGCATGGTCGCGCCGTTCg > 2:1195701/1‑150 (MQ=255) | CTCTTGAAACGTCGTGGGCATCAGGCGAGTCGTTATAGGTGTGTGAAGACGCGGCAGTTTACCCCATTGTGGGAAAAGTGCCCATTCGACCACAGGTTACGCGGCCCCCTGTAGGATCGGGTTTACCCGCGAATGCGTCGGCAAATTCAA‑GATCGCATTCGCGGGTAAACCCGATCCTACAGGGATAGGTGAAGCTGTTTAGTTACGGCGTTCGACAATATAACGCGCCAAGGCCCGCAGCGGCTCGGCCTTTTCGCCGAACCCTTGCAGTGCGGCCAGCGCCTGGTCGCGCAGTTCG > NC_002947/614164‑614461 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |