| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,717,790:1 | +G | 8.0% | coding (52/1518 nt) | paaH ← | 3‑hydroxyacyl‑CoA dehydrogenase PaaC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,717,790 | 1 | . | G | 8.0% | 494.2 / 37.4 | 125 | coding (52/1518 nt) | paaH | 3‑hydroxyacyl‑CoA dehydrogenase PaaC |
| Reads supporting (aligned to +/- strand): ref base . (64/51); new base G (6/4); total (70/55) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.89e-01 | |||||||||||
Only 100 of 125 total aligned reads displayed.
CGGCCAGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGT > NC_002947/3717646‑3717935 | cGGCCAGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑Ggcgc > 1:1500032/1‑150 (MQ=255)cGGCCAGTAACTTTCCTTTGACCAGCAGCCGGGCCATGTGTCGATCGATACCCGTCAT‑CGCATGAGCCCGGCCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑Ggcgc < 1:2361071/150‑1 (MQ=255) cAGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGc > 2:1538451/1‑150 (MQ=255) cAGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGc > 2:720961/1‑150 (MQ=255) aGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCa > 1:642904/1‑150 (MQ=255) tttCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATc > 1:550686/1‑150 (MQ=255) tttCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATc > 1:1604142/1‑150 (MQ=255) tttCCTTTGTCCACCAGCCGGACCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCG‑CCATGGGCGCCgg < 1:2041713/142‑1 (MQ=255) tttGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGc < 1:421190/150‑1 (MQ=255) gTCCACCAGCCGGGCCAGTTGGCGATCGACACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCAc < 1:1543033/150‑1 (MQ=255) caccaGCCGGGCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTg > 1:1182245/1‑150 (MQ=255) accaGCCGGGCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGc > 1:2392251/1‑150 (MQ=255) accaGCCGGGCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGc > 2:2312640/1‑150 (MQ=255) cGGGCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACAttg > 1:2392891/1‑150 (MQ=255) gggCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACAttgc > 2:2470811/1‑150 (MQ=255) ggCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACAttgct > 1:2908953/1‑150 (MQ=255) gTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGa < 1:2919429/150‑1 (MQ=255) gTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGa < 1:2470811/150‑1 (MQ=255) gTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGa > 1:2656910/1‑150 (MQ=255) cgatcgatACCCG‑CACACGAATGGGCGGCCGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCg < 2:160243/150‑1 (MQ=255) gatcgatACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCAc > 1:1692399/1‑127 (MQ=255) gatcgatACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCAc < 2:1692399/127‑1 (MQ=255) gatcgatACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTACTTGCGAGTGCgg > 1:881776/1‑150 (MQ=255) atACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTTCACATTGCTTGCGCGTGCGGCCAtt > 2:1921455/1‑150 (MQ=255) ccGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCa > 1:1963544/1‑150 (MQ=255) ccGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCa > 2:1835587/1‑150 (MQ=255) cAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAgcgc < 1:1538328/150‑1 (MQ=255) cGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGcccc < 2:2683198/150‑1 (MQ=255) gCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCt > 1:2019195/1‑150 (MQ=255) gggCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGaa < 1:1835587/150‑1 (MQ=255) gggCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGaa < 2:2260983/150‑1 (MQ=255) gggCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGaa < 2:2908953/150‑1 (MQ=255) ggcggcAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAg > 1:839581/1‑150 (MQ=255) cggcAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGc > 2:628593/1‑150 (MQ=255) ggcAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCt > 1:2558262/1‑150 (MQ=255) ggcAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCG‑CCATGGGCGCCggta < 2:546697/88‑3 (MQ=255) ggcAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCG‑CCATGGGCGCCggta > 1:546697/1‑86 (MQ=255) cagcaCCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTgg < 1:1175409/150‑1 (MQ=255) agcaCCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGgc < 2:1604142/150‑1 (MQ=255) gcaCCCGGGCGGTGATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGgcg > 2:2818190/1‑150 (MQ=255) aCCCGGGCGGTTATCGTATAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTAGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGgcgtg > 2:2093318/1‑150 (MQ=255) gCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTg < 2:2314223/150‑1 (MQ=255) ggTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGtt < 1:628593/150‑1 (MQ=255) ggTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTCCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGtt < 1:1921455/150‑1 (MQ=255) ttATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCt < 1:2050168/126‑1 (MQ=255) ttATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCt > 2:2050168/1‑126 (MQ=255) ttATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCa < 2:1963544/150‑1 (MQ=255) ttATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCa < 2:2498505/150‑1 (MQ=255) cGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGaa > 1:887080/1‑150 (MQ=255) gTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAg > 1:557581/1‑150 (MQ=255) tAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGa > 2:840912/1‑97 (MQ=255) tAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGa < 1:840912/97‑1 (MQ=255) tAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAgg > 1:732926/1‑150 (MQ=255) tAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAgg > 2:153121/1‑150 (MQ=255) agagCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCAGCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGc < 1:2680899/150‑1 (MQ=255) tGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGGCAATTCAAGGCTGGCTTTCGTTTTTTCATGAATGCGTTCAc < 2:1274636/150‑1 (MQ=255) aCGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTgg < 1:1893889/121‑1 (MQ=255) aCGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTgg > 2:1893889/1‑121 (MQ=255) aCGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTgg > 2:1694313/1‑121 (MQ=255) aCGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTgg < 1:1694313/121‑1 (MQ=255) gggTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGc > 1:673484/1‑65 (MQ=255) ggTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTc < 2:2936160/150‑1 (MQ=255) gTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTGAACGCCTTca < 1:1519687/150‑2 (MQ=255) gTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGGTTGGTCATGAAGGCGTTCACGCCTTcg > 1:682560/1‑150 (MQ=255) ggccggccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTGAACGCCTTcatg < 2:550686/150‑4 (MQ=255) gccggccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCgg < 2:2558262/150‑1 (MQ=255) ccggccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGGGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGt > 1:87101/1‑150 (MQ=255) cggccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCAt > 2:1789184/1‑126 (MQ=255) cggccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTa > 1:1551065/1‑150 (MQ=255) cggccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTa > 2:228951/1‑150 (MQ=255) cggccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCAAATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTa > 1:2458185/1‑150 (MQ=255) gccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGt > 2:1235785/1‑150 (MQ=255) ccTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTc < 2:557581/150‑1 (MQ=255) ccGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACAtt > 2:2994835/1‑61 (MQ=255) ccGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAg < 1:2966449/97‑1 (MQ=255) ccGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAg > 2:2966449/1‑97 (MQ=255) gagcTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTgcgc > 1:3066717/4‑150 (MQ=255) gACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTgcgc < 1:558939/150‑1 (MQ=255) aCCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGtt < 2:2206080/109‑1 (MQ=255) aCCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGtt > 1:2206080/1‑109 (MQ=255) ccTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGccc > 1:895557/1‑150 (MQ=255) ccTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGccc < 2:1500032/150‑1 (MQ=255) cTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCt > 2:2611898/1‑150 (MQ=255) gCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGcctggcag > 1:1786015/1‑144 (MQ=255) aTACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGgc < 2:2392251/150‑1 (MQ=255) tgccGGCG‑CCATGGGCGCCGGTACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAgcg < 1:1738582/70‑1 (MQ=37) tgccGGCG‑CCATGGGCGCCGGTACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAgcg > 2:1738582/3‑72 (MQ=37) aCCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGgcgc > 1:1316744/1‑150 (MQ=255) ccGGCGCCATG‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCt > 2:2498998/1‑150 (MQ=255) ccGGCG‑CCATGGGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGtt > 2:875647/1‑109 (MQ=255) ccGGCG‑CCATGGGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCa > 2:1269509/1‑144 (MQ=255) ccGGCG‑CCATGGGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCa < 1:1269509/144‑1 (MQ=255) cGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTg > 1:1080806/1‑150 (MQ=255) cgcCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAg < 2:895557/150‑1 (MQ=255) cccAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGt > 1:434050/1‑150 (MQ=255) ccAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAg > 1:159034/1‑97 (MQ=255) ccAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAg < 2:159034/97‑1 (MQ=255) aT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGttt > 1:487543/1‑85 (MQ=255) aT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGtgaacg < 2:2762068/104‑6 (MQ=255) aT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGtgaacg > 1:2762068/1‑99 (MQ=255) | CGGCCAGTAACTTTCCTTTGTCCACCAGCCGGGCCAGTTGGCGATCGATACCCGTCAC‑CGCCTGGGCGGCAGCACCCGGGCGGTTATCGTAGAGCTTGACGGGGTGGCCGGCCTGGGCCGCGACCTGGGCGATACCGGCGCCCAT‑GGCGCCGGCACCGATCACCGCCACCTGCACATTGCTTGCGAGTGCGGCCATTTTCAGCGCCCCTTGAAGGCTGGCGTGCGTTTGTTCATGAAGGCGTTCACGCCTTCGCGGTAGTCCTCGCTGCGCCCTGCCAGGCGCTGCAGGT > NC_002947/3717646‑3717935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |