| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 3,813,291:1 | +A | 5.3% | coding (325/852 nt) | PP_3369 → | LysR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,813,291 | 1 | . | A | 5.3% | 472.3 / 18.4 | 114 | coding (325/852 nt) | PP_3369 | LysR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base . (50/58); new base A (2/4); total (52/62) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.26e-01 | |||||||||||
Only 100 of 119 total aligned reads displayed.
ACGAAGGCCAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACAGAGCCAACTCTGGTGGTCAGCCTGCTG > NC_002947/3813145‑3813440 | aCGAAGGCCAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑Ggc > 2:487579/1‑150 (MQ=255)aCGAAGGCCAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑Ggc > 1:885098/1‑150 (MQ=255) cGAAGGCCAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑Ggcg > 1:2764182/1‑150 (MQ=255) ggCCAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTg < 2:1552418/150‑1 (MQ=255) gCCAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTgg > 1:2879696/1‑150 (MQ=255) gCCAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTgg < 1:3035201/150‑1 (MQ=255) cAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGc > 2:2829772/1‑150 (MQ=255) aCGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCCAGGCGCC‑GGGCGa < 2:1352294/150‑1 (MQ=255) cGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAg < 2:1172737/150‑1 (MQ=255) ttgtTGCGGAACTCGCCGAGCAGATGGCCATGTACTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGc < 1:97092/149‑1 (MQ=255) tcttGCCGAACTCGCCGAGCAGATTGCCATGTCTTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTTGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCCAGGCGCC‑GGGCGatga < 1:27657/148‑4 (MQ=255) ttGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGt < 1:487579/150‑1 (MQ=255) tGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTa > 2:2920403/1‑150 (MQ=255) ggAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCTAAGTGGTGCGTTCGGCAGCGCGGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCa < 1:1637312/150‑1 (MQ=255) ggAACTCACCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCa < 1:3048855/150‑1 (MQ=255) gAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAg > 1:2896926/1‑150 (MQ=255) aaCTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAgc < 2:2450293/150‑1 (MQ=255) tCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCt < 1:1132060/150‑1 (MQ=255) gCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTAc > 1:1027218/1‑150 (MQ=255) gCCGAGCAGATGGCCATGTCCTCTTTTGACCTGGAGCATTTCGCCCGAGCCGGCCAACAGAAAGTGGAAGGCGAAGTGGAGCTCTCTTCACCACCGTCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTAc > 2:347851/1‑150 (MQ=255) ccGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTAcc < 1:1512727/150‑1 (MQ=255) aGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGc > 2:1162611/1‑150 (MQ=255) tGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTgc < 1:1063442/150‑1 (MQ=255) tGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTgc < 2:2171022/150‑1 (MQ=255) aTGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCCAGGCGCC‑GGGCGatga > 2:2815753/1‑119 (MQ=255) gTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGaa < 2:2896926/150‑1 (MQ=255) tCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAg > 2:14774/1‑150 (MQ=255) tCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAg > 1:312390/1‑150 (MQ=255) ctctTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCt > 2:2643672/1‑150 (MQ=255) tctTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTg < 1:1417023/150‑1 (MQ=255) tttGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCt < 2:311158/113‑1 (MQ=255) tttGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCt > 1:311158/1‑113 (MQ=255) tttGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTa < 1:1673436/150‑1 (MQ=255) gCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGgc < 1:1834202/150‑1 (MQ=255) acccTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGgc > 2:2109155/2‑150 (MQ=255) cccTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGgca > 2:1502267/1‑150 (MQ=255) ccTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCt < 2:2151437/108‑1 (MQ=255) ccTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCt > 1:2151437/1‑108 (MQ=255) ccTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTg < 1:2210111/142‑1 (MQ=255) ccTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTg > 2:2210111/1‑142 (MQ=255) ccTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGgcag > 1:1350755/1‑150 (MQ=255) aGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTACTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAt < 2:2262742/150‑1 (MQ=255) cATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑cc > 2:578267/1‑150 (MQ=255) tttCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGTGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCaa < 2:387782/150‑1 (MQ=255) ttCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAg < 1:541544/150‑1 (MQ=255) ttCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAg < 2:2504523/150‑1 (MQ=255) gcgcCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCt < 1:578267/150‑1 (MQ=255) ccGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTgg < 2:145121/150‑1 (MQ=255) ccGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTgg < 2:2556507/150‑1 (MQ=255) cGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGt > 1:1931508/1‑150 (MQ=255) acagacagTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTccgccg < 2:2879696/150‑1 (MQ=255) agacagTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTa > 2:3057331/1‑116 (MQ=255) agacagTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTa < 1:3057331/116‑1 (MQ=255) agacagTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCcgcg > 1:564329/1‑150 (MQ=255) agTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGc < 1:14774/150‑1 (MQ=255) gTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCt < 1:2829772/150‑1 (MQ=255) aGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACAt > 1:1659269/1‑150 (MQ=255) aGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTACGCATCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACAt < 1:1597998/150‑1 (MQ=255) ggCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATc < 1:2142144/150‑1 (MQ=255) gCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGTAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCa < 1:2920403/150‑1 (MQ=255) cGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAg > 2:536348/1‑150 (MQ=255) gAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCCAGGCGCC‑GGGCGa < 1:1447615/62‑1 (MQ=38) gAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCCAGGCGCC‑GGGCGa > 2:1447615/1‑62 (MQ=38) gAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGc < 2:1027692/150‑1 (MQ=255) gAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGc > 1:2159567/1‑150 (MQ=255) aaGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCa > 2:1926363/1‑150 (MQ=255) gtgCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCaa > 2:2954870/1‑110 (MQ=255) gCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCt > 1:2599968/1‑150 (MQ=255) ctctCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAg > 1:1213559/1‑75 (MQ=255) ctctCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCt < 2:87848/149‑1 (MQ=255) ctctCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCt > 1:87848/1‑149 (MQ=255) ctctCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTg < 1:2109155/150‑1 (MQ=255) tctcGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTgg > 1:2800027/1‑150 (MQ=255) ctcGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCaa < 1:2848715/105‑1 (MQ=255) ctcGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCaa > 2:2848715/1‑105 (MQ=255) ctcGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGc < 1:2193736/150‑1 (MQ=255) tcGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGcc > 1:2724026/1‑150 (MQ=255) tcGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGAGCAAGCTGTACAAGCGCTACCACCGGATGCGCCTGTAGCTGGTAGGCGCTAAAG‑CCAAGGCAGCCTTTGTCCTCCGCGAAGCTGACATCAGCATCGCCCTGGcc > 2:345686/1‑150 (MQ=255) gCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAgg > 2:11539/1‑150 (MQ=255) caccacCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGc < 1:1742223/150‑1 (MQ=255) caccacCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGc < 2:2764182/150‑1 (MQ=255) caccacCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCAAAGCTGCGAATGACGACGGTAGGCAGCAAAT‑CAAAGGCATGCTTGGTCCGCAGCGAAGATCACATCAGCATCGCCCTGGCCAGGc > 2:187376/1‑150 (MQ=255) accaccGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGcc < 1:1162611/150‑1 (MQ=255) accGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAACTGTAACATCGCTACCCACAGCTGCGCCTGAAGCTGGTATGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGAc > 1:1598257/1‑150 (MQ=255) ccGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACa < 2:183343/150‑1 (MQ=255) ggCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACaga > 2:2966608/1‑150 (MQ=255) ctgctgGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACAGAGCCa > 1:557037/1‑150 (MQ=255) tgctgGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACAGAGCCaa < 2:1931508/150‑1 (MQ=255) ggCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTA‑GCATCGCCTGCCGAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACAGAGCCAACTCtg < 2:885098/150‑1 (MQ=255) ggCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCAACTGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACAGAGCCAACTCtg < 1:187376/150‑1 (MQ=255) gcagcaTCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CTAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACAGAGCCAACTCtgg > 1:657145/1‑150 (MQ=255) gcagcaTCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACAGAGCCAACTCtgg < 2:607632/150‑1 (MQ=255) gcaTCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTccgcc < 1:2555423/96‑1 (MQ=255) gcaTCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTccgcc > 2:2555423/1‑96 (MQ=255) atcGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACaga < 2:1189933/131‑1 (MQ=255) atcGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACaga > 1:1189933/1‑131 (MQ=255) ccc‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACAGAGCCAACTCtggtg < 1:866602/140‑1 (MQ=255) ccc‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACAGAGCCAACTCtggtg > 2:866602/1‑140 (MQ=255) cc‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACAGAGCCAACTCTGGTGGTCAGCctgct < 2:1714270/150‑1 (MQ=255) c‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACAGAGCCAACTCTGGTGGTCAGCctgctg < 1:347851/150‑1 (MQ=255) | ACGAAGGCCAACGTGTTGCGGAACTCGCCGAGCAGATGGCCATGTCCTCTTTTGCCCTGGAGCATTTCGCCAGCGCCGGCCAACAGACAGTGGAAGGCGAAGTGGTGCTCTCGGCACCACCGGCGCTGCTGGGCAGCATCATCGCCC‑GGCGCCTGGGCGAGCTGTACCAGCGCTACCCACAGCTGCGCCTGAAGCTGGTAGGCAGCAAAT‑CCAAGGCATCCTTGGTCCGCCGCGAAGCTGACATCAGCATCGCCCTGGCCAGGCCGACAGAGCCAACTCTGGTGGTCAGCCTGCTG > NC_002947/3813145‑3813440 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |