| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,229,249:1 | +C | 12.5% | intergenic (‑143/+33) | PP_4606 ← / ← PP_4607 | ferric siderophore receptor/transmembrane sensor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,229,249 | 1 | . | C | 12.5% | 444.8 / 57.7 | 120 | intergenic (‑143/+33) | PP_4606/PP_4607 | ferric siderophore receptor/transmembrane sensor |
| Reads supporting (aligned to +/- strand): ref base . (59/46); new base C (10/5); total (69/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.80e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.25e-01 | |||||||||||
Only 100 of 129 total aligned reads displayed.
CTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGCCGCTGACCTTGC > NC_002947/5229101‑5229397 | cTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACggg‑g < 1:1234583/150‑1 (MQ=255) ttCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACggg‑gg < 2:585298/150‑1 (MQ=255) cATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGt < 1:179446/150‑1 (MQ=255) gACGCAGACCTGTGAGGGGGTGATTGCTCTTAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTAc < 1:1541993/150‑1 (MQ=255) gCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCg > 2:64298/1‑150 (MQ=255) cAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGt < 1:1622006/150‑1 (MQ=255) aGACCTGTGAGGGGGTGATTACTGCGTTTCTATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTg < 1:129/150‑1 (MQ=255) cTGTGAGGGGGTGATTATTGCGAATCCAACGCACTTTAACTCTTTACTCTGATGCCACTTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAaga < 2:2038371/150‑1 (MQ=255) cTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGCCAGCCTCTTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTACCCGCGAaga > 1:1401176/1‑150 (MQ=25) gAGGGGGTGATCATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCTCCCC‑TACGGG‑GGGTTTACTCGTGAAGAGGCt < 2:2928969/150‑1 (MQ=255) gggggTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTgg < 1:603701/150‑1 (MQ=255) attattGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCg < 2:2603058/131‑1 (MQ=255) attattGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCg > 1:2603058/1‑131 (MQ=255) attattGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGc < 2:1245890/150‑1 (MQ=255) gCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTAc < 1:552049/150‑1 (MQ=255) aatcaatcGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGCCAGCCTCTTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTAcc < 1:1428572/120‑1 (MQ=21) aatcaatcGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGCCAGCCTCTTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTAcc > 2:1428572/1‑120 (MQ=25) aatcGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGACCCa < 2:1585010/150‑1 (MQ=255) tcGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAgg < 1:2732652/150‑1 (MQ=255) cGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAggg < 1:1677076/150‑1 (MQ=255) cGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAggg < 1:1832210/150‑1 (MQ=255) gCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGt > 1:1982412/1‑150 (MQ=255) tttCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTAc < 2:1818846/107‑1 (MQ=255) tttCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAAc > 1:2332042/1‑140 (MQ=255) cTCATTACACGGATGTCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACggg‑gg < 1:1980673/96‑1 (MQ=255) cTCATTACACGGATGTCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACggg‑gg > 2:1980673/1‑96 (MQ=255) tCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTAc > 2:2378225/1‑129 (MQ=255) aTTACACGGATGCCACGTGCTGTTACCTCCCCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACggg‑g < 1:1553428/92‑1 (MQ=255) aTTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGt > 1:122213/1‑95 (MQ=255) aTTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCaa > 1:81422/1‑150 (MQ=255) aTTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGGTTAGCCTTGAAGTGGCTGGCACAGGCAACTACCGCAACAGGGTCAAACG‑CCCCaa > 2:346504/1‑150 (MQ=255) ttACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAac > 1:3070256/1‑150 (MQ=255) tACACGGCTGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTACCCgc > 2:908013/1‑100 (MQ=21) tACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTACCCgc < 1:908013/101‑2 (MQ=21) acacGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAg > 2:553520/1‑116 (MQ=255) ccACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCCCCCCGTAGGGGCGGGTTTACCCgc > 2:1512994/1‑92 (MQ=25) ccACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCCCCCCGTAGGGGCGGGTTTACCCgc < 1:1512994/93‑2 (MQ=25) cACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTAccc > 2:72829/1‑88 (MQ=255) cACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTAccc < 1:72829/88‑1 (MQ=255) gTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTAcc < 1:2644359/84‑1 (MQ=21) gTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTAcc > 2:2644359/1‑84 (MQ=21) gTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAAcc < 1:64298/150‑1 (MQ=255) ttACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACggg‑ggg < 2:324970/72‑1 (MQ=255) ttACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACggg‑ggg > 1:324970/1‑72 (MQ=255) ttACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTAGCAGTGAAGAGGCTGGAACAGGCAAGTACCGAACCAGGGACAAACG‑CCACAACAAGGTCTGCCGTGAAAAAccc > 2:511423/1‑150 (MQ=255) ttACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAAc < 1:1998907/102‑1 (MQ=255) ttACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAAc > 2:1998907/1‑102 (MQ=255) cTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTAcc > 2:1864731/1‑74 (MQ=255) cTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTAcc < 1:1864731/74‑1 (MQ=255) cTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCa > 2:375060/1‑150 (MQ=255) aCCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCt > 1:1250402/1‑150 (MQ=255) cTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTg > 1:1728391/1‑150 (MQ=255) gAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGaa < 1:375060/150‑1 (MQ=255) gAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGaa > 1:264801/1‑150 (MQ=255) aaaTATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCATGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAAt > 1:2341953/1‑150 (MQ=255) aaTATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCCAGG‑CACGTGTCGCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATc > 2:861813/1‑150 (MQ=38) tatTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCa > 1:445587/1‑150 (MQ=255) cTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGaa > 1:2341369/1‑79 (MQ=255) cTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGaa < 2:2341369/79‑1 (MQ=255) tgtgGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCcagca > 1:796783/1‑150 (MQ=255) agcCTCTTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCCGCGAATCCAGCGCCCGCCGCGGCt > 1:2163688/2‑150 (MQ=37) ctctTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTACCCGCGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCgg > 2:66008/1‑150 (MQ=37) tctTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGc > 2:2812045/1‑150 (MQ=255) tctTCACGGGTAAACCC‑CCCG‑TAGGGGCGGGTTTACCCGCGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGc > 1:312990/1‑150 (MQ=37) tCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑cc < 1:2190384/80‑1 (MQ=255) tCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑cc > 2:2190384/1‑80 (MQ=255) cgGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCgg > 2:2413178/1‑150 (MQ=255) gggTAAACCC‑CCCG‑TAGGGGCGGGTTTACCCGCGAAGAGGCCGCCACA‑GCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGa > 1:670739/1‑150 (MQ=25) ggTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCAc > 2:1332227/1‑145 (MQ=255) ggTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGa > 1:1836760/1‑150 (MQ=255) ggTAAACCC‑CCCG‑TAGGGGCGGGTTTACCCGCGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGa > 2:2948391/1‑150 (MQ=38) gTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGaa > 1:1376658/1‑150 (MQ=255) gTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGaa < 1:1941359/150‑1 (MQ=255) gTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGaa > 2:171228/1‑150 (MQ=255) aaCCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCt > 2:1980848/1‑150 (MQ=255) aCCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTg > 2:252623/1‑150 (MQ=255) aCCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTg < 1:2025165/150‑1 (MQ=255) aCCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGGGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCCCAGGGAAGcgg > 1:1583965/1‑148 (MQ=255) cccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCa > 1:1824181/1‑117 (MQ=255) cccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCa < 2:1824181/117‑1 (MQ=255) cccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGc > 1:61173/1‑150 (MQ=255) cccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGc > 1:2194218/1‑150 (MQ=255) cccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGc > 2:259455/1‑150 (MQ=255) cccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGc > 1:194395/1‑150 (MQ=255) cccGCCCC‑TACGGG‑GGGTTTACCCGTGAAAAGGCTGCCACAGTCACCTACCGAACCATGGTCAACCG‑CCCCACCACGGCCTGCCGTGAAAAACCCATCACCTTCCCCAGCTAATCCATCGCCAGCAGCGGCTCGGCCACCGCGACGCTGc > 2:555695/1‑150 (MQ=255) ccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACGGGCACCTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGcc > 2:107178/1‑150 (MQ=255) ccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAgg < 2:1631376/58‑1 (MQ=255) ccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAgg > 1:1631376/1‑58 (MQ=255) ccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCAt > 2:1436420/1‑96 (MQ=255) ccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCAt < 1:1436420/96‑1 (MQ=255) ccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCg > 2:1431315/1‑133 (MQ=255) ccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGc > 1:591392/1‑135 (MQ=255) ccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGcc > 1:1881734/1‑150 (MQ=255) ccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGcc < 2:3070256/150‑1 (MQ=255) ccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGcc > 1:1810023/1‑150 (MQ=255) ccGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGcc > 2:2129833/1‑150 (MQ=255) ccGCCCC‑TACGGG‑GGGTTTACCCGTGAAAAGGCTGGCACAAGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATAACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGcc > 2:891326/1‑150 (MQ=255) cc‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGCCGCTGa < 2:1376658/150‑1 (MQ=255) c‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGCCGCTGAc < 2:194395/150‑1 (MQ=255) tACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGCCg > 1:990195/1‑144 (MQ=255) | CTTCATGGACGCAGACCTGTGAGGGGGTGATTATTGCGAATCAATCGCACTTTCACTCATTACACGGATGCCACGTGCTGTTACCTCACCTGTGCCTGGAAATATTTTTGCTGTGGCGGCCTCTTCGCGGGTAAACCCGCCCC‑TACGGG‑GGGTTTACCCGTGAAGAGGCTGGCACAGGCAACTACCGAACCAGGGTCAAACG‑CCCCAACACGGTCTGCCGTGAAAAACCCATCACCTTGCCCAGCGAATCCAGCGCCAGCAGCGGCTCGGCCACCGGGAAGCTGCCGCTGACCTTGC > NC_002947/5229101‑5229397 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |