| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 90359 = | 141 (1.230) | 9 (0.090) | 9/212 | NT | 7.3% | intergenic (+34/+88) | PP_0079/PP_0080 | transcriptional regulator/hypothetical protein |
| ? | NC_002947 | 90414 = | 107 (1.080) | intergenic (+89/+33) | PP_0079/PP_0080 | transcriptional regulator/hypothetical protein | |||||
CCAGGATCGCAGCGGGGATGGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/90523‑90359‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCG > NC_002947/90414‑90562 CCAGGATCGCAGCGGGGATGGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACT > 1:154633/1‑150 CAGGATCGCAGCGGGGATGGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTG > 2:890580/1‑150 CAGGATCGCAGCGGGGATGGTGGACATGCTGGAGCTGGACTTACACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTG > 2:87523/1‑150 AGGATCGCAGCGGGGATGGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGT > 1:1803485/1‑150 AGGATCGCAGCGGGGATGGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGATCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACCCAAGGCCCCTCCCACATGGGCCGACGTGTGCAGTGCAACTGT > 2:284454/1‑150 GATCGCAGCGGGGATGGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGG < 1:2027600/150‑1 GATCGCAGCGGGGATGGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGG < 2:223283/150‑1 GATCGCAGCGGGGATGGTGGACATGCTGGAGCCGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGG > 2:1156052/1‑150 TCGCAGCGGGGATGGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGA < 2:2881933/150‑1 CAGCGGGGATGGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCG < 2:1019256/150‑1 CAGCGGGGATGGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCG < 1:1640593/150‑1 CAGCGGGGATGGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCG < 1:2495361/150‑1 GCGGGGATGGTGGACATGCTGGAGCTGGACTTGCACTGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGC < 2:2247730/150‑1 GGGATGGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTT < 2:531475/150‑1 GGATGGTGGACATGCTGGAGCGGTACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACTCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGTGAGCGGCCTTG < 2:2930394/150‑1 CTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGG > 2:458861/1‑101 CTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGG < 1:458861/101‑1 CTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGA > 1:1308719/1‑97 CTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGA < 2:1308719/97‑1 CATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGC < 2:1126182/58‑1 CATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGC > 1:1126182/1‑58 GGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACT < 1:2208937/37‑1 GGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACT > 2:2208937/1‑37 GCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTA > 1:2040110/1‑87 GCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTA < 2:2040110/87‑1 CTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATC > 2:2482540/1‑81 CTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATC < 1:2482540/81‑1 TCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAG > 1:1250306/1‑127 TCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAG < 2:1250306/127‑1 CACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAG < 1:910814/89‑1 CACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAG > 2:910814/1‑89 TGCAGTGCCACTGTGGGAGCGGCCTTGTGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAA > 1:1379098/1‑150 TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCC > 2:2560316/1‑104 TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCC < 1:2560316/104‑1 TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTC < 2:2810971/103‑1 TGTGGGAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTC > 1:2810971/1‑103 GAGCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCA < 1:841941/150‑1 GCGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGG < 2:609014/150‑1 CGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCA < 2:2435851/138‑1 CGGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCA > 1:2435851/1‑138 GGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCC < 2:2635408/69‑1 GGCCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCC > 1:2635408/1‑69 CCTTGCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCC > 1:2028369/1‑150 GCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTACAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCG > 1:1390758/1‑150 CCAGGATCGCAGCGGGGATGGTGGACATGCTGGAGCTGGACTTGCACCGGAGCGAGCACCTGAACTTCGTGGTCTAGATTGCCGGGGCTGCTGCGCAGCCCATCGCGACGCAAGGCCGCTCCCACATGGGCCGGCGTGTGCAGTGCCACTGTGGGAGCGGCCTTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/90523‑90359‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggccttgCGTCGCGATGGGCTGCGCAGCAGCCCCGGCAATCTAGACCACGAAGTTCAGGTGCTCGCTCCGGTGCAAGTCCAGCTCCAGCATGTCCACCATCCCCGCTGCGATCCTGGACAAGCGCCGCAACGGCTCAGCCAGCCCAGGCTCCAGCG > NC_002947/90414‑90562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |