New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 196654 | NA (NA) | 3 (0.030) | 3/230 | NT | 5.3% | coding (2160/26049 nt) | PP_0168 | putative surface adhesion protein |
? | NC_002947 | = 196726 | 57 (0.500) | coding (2232/26049 nt) | PP_0168 | putative surface adhesion protein |
CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTaccgttg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/196506‑196654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGGTCACTGTCACCGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATCACGCCGCC < NC_002947/196726‑196571 CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACTCTGTCCAACGGCCAAACGATTA > 2:1476692/1‑150 CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTA < 1:764410/150‑1 CACGATCACCGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGAACCTGAGCAATCCTGTCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAC > 2:1495401/1‑150 CACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGTTCACCAAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTAC > 2:1225665/1‑150 CACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTAC > 1:1344727/1‑150 CACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAC > 1:1760213/1‑150 CACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAC > 1:2188521/1‑150 CACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAC > 2:566457/1‑150 CACGATCAACGACTCGGTCGATGCCACCACCGCGACCATGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAC > 2:2115140/1‑150 ACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACC < 2:1824238/150‑1 ACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAC > 1:631173/1‑149 ACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAC < 2:631173/149‑1 CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGAAAGTGACCCTGTCCAACGGCCAAACCATTACCG < 2:2213370/150‑1 CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACC > 1:2016355/1‑149 CGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACC < 2:2016355/149‑1 GATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGT > 1:2276074/1‑150 GATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTCATCACCTACACCGTGACCCTGCGCACTCCTGCCCAGACGCCGGTGACAGTGACGCTGTCCAACGGCCCAACCACTACCGT > 2:387034/1‑150 GATCAACGACTCGGTCGATGCCACCACCGCAACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGT > 2:2566181/1‑150 ATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTT < 2:1760213/150‑1 ATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTT < 1:2111785/150‑1 TCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAGCAACCCTGCCCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTG > 1:2126405/1‑150 TCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG > 1:1632202/1‑150 TCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG > 1:2952428/1‑150 TCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG > 1:1985467/1‑150 TCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTAACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTA > 1:994679/1‑144 TCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTAACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTA < 2:994679/144‑1 ccgcccCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGTTG > 2:1528716/7‑150 GACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAC > 1:2668143/1‑111 GACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTAATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAC < 2:2668143/111‑1 TCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATG < 1:1528716/150‑1 ACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACC > 1:615387/1‑71 ACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACC < 2:615387/71‑1 ACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG < 2:1785193/73‑1 ACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTG > 1:1785193/1‑73 TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGT > 1:814426/1‑67 TGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGT < 2:814426/67‑1 CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGT > 1:2840248/1‑49 CCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGT < 2:2840248/49‑1 CCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTT < 2:876479/123‑1 CCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTACCGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTT > 1:876479/1‑123 CCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAC > 1:1635036/1‑38 CCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTAC < 2:1635036/38‑1 ACCGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGGTCACTGTCACCGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATCAC < 1:704894/150‑1 ACCGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGGTCACTGTCAACGGCGTCTGGGCAGGATTACTCAGGGTCACGGAGTAGGTGATCAa > 2:2036761/1‑149 ACCGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGG > 2:294716/1‑95 ACCGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGG < 1:294716/95‑1 ACCGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGA > 2:907897/1‑90 ACCGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGA < 1:907897/90‑1 CGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGGTCACTGTCACCGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATTACGC > 2:2245911/1‑150 CGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGGGCACTGTCGCCGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATTACGC > 1:2155277/1‑150 CGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAA < 2:2240478/72‑1 CGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAA > 1:2240478/1‑72 GTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGTGCGTGGACAGGGTCACTGTCACCGGCGTCTGGGCAGGATTGCTCACGGTCACGGTGTAGGTGATCACGCC > 1:190346/1‑150 GTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGGTCACTGTCACCGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATCACGCC < 1:1284005/150‑1 GTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGGTCACTGTCACCGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAG < 2:2749379/139‑1 GTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGGTCACTGTCACCGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAG > 1:2749379/1‑139 TTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGGTCACTGTCACCGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATCACGCCG > 1:1635305/1‑150 TTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCT < 2:418578/60‑1 TTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCT > 1:418578/1‑60 TGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGGTCACTGTCACCGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATCACGCCGC < 2:2558426/150‑1 TGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGGTCACTGTCACCGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATCACGCCGC < 1:2036761/150‑1 GTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGGTCACTGTCACCGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAAGTGATCACGCCGCC < 2:2070205/150‑1 CCACGATCAACGACTCGGTCGATGCCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACCTACACCGTGACCCTGAGCAATCCTGCCCAGACGCCGGTGACAGTGACCCTGTCCAACGGCCAAACCATTaccgttg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/196506‑196654 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACCGTTGTTGTAGACGTCATTCGCCGGGGTCTGGAAATCGACGCTGCCCTGGGTCTTGCCGGCTTCAACGGTAATGGTTTGGCCGTTGGACAGGGTCACTGTCACCGGCGTCTGGGCAGGATTGCTCAGGGTCACGGTGTAGGTGATCACGCCGCC < NC_002947/196726‑196571 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |