New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	342893 =	125 (1.090)	8 (0.070)	8/228	NT	6.8%	intergenic (+21/+111)	gabP‑I/PP_5439	gamma‑aminobutyrate permease/hypothetical protein
	?	NC_002947	342923 =	103 (0.960)					intergenic (+51/+81)	gabP‑I/PP_5439	gamma‑aminobutyrate permease/hypothetical protein

GAACTGGTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCACAAAAAAAGGCCGCACCCT‑TCACAGGGCGCGGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/343048‑342893 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccttTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCT  >  NC_002947/342923‑343071                                                                                                                                                                                                                                                                                                                    GAACTGGTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATACCCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCACAAAAAAAGGCCGCACCCT‑TCACAGGGCGC                                                                                                                                                             <  1:1816649/150‑1  AACTGGTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCACAAAAAAAGGCCGCACCCT‑TCACAGGGCGCG                                                                                                                                                            >  1:1409284/1‑150   acgGGTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCACAAAAAAAGGCCGCACCCT‑TCACAGGGCGCGG                                                                                                                                                           <  1:2111802/147‑1       GTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCACAAAAAAAGGCCGCACCCT‑TCACAGGGCGCGGCCTT                                                                                                                                                       >  2:2845067/1‑150                  GCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCACAAAAAAAGGCCGCACCCT‑TCACAGGGCGCGGCC                                                                                                                                                         <  1:1261757/137‑1                  GCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCACAAAAAAAGGCCGCACCCT‑TCACAGGGCGCGGCC                                                                                                                                                         >  2:1261757/1‑137                                                                                TGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCACAAAAAAAGGCCGCGCCCTGTGA‑AGGGTGCGGCCTTTTTTTGTGGCCTGT                                                                                                                                         <  1:1026055/91‑1                                                                                TGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCACAAAAAAAGGCCGCGCCCTGTGA‑AGGGTGCGGCCTTTTTTTGTGGCCTGT                                                                                                                                         >  2:1026055/1‑91                                                                                    CCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCACAAAAAAAGGCCGCGCCCT‑GTGAAGGGTGCGGCCTT                                                                                                                                                       <  1:2890431/73‑1                                                                                                                               AAGGCCGCACCCT‑TCACAGGGCGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGG                                                                                                            <  2:2890431/73‑1                                                                                                                                 GGCCGCCCCCT‑TCACAGGGCGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCA                             >  2:819789/1‑150                                                                                                                                    CGCACCCT‑TCACAGGGCGCGGCCTTTTTTTGTGGCCTGTGATGGCCGTTTCGCGTGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGACCTTTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTTGCCTCCAGTT                          >  2:356468/1‑150                                                                                                                                    CGCACCCT‑TCACAGGGCGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGC                                          >  1:2798274/1‑134                                                                                                                                    CGCACCCT‑TCACAGGGCGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGC                                          <  2:2798274/134‑1                                                                                                                                     GCACCCT‑TCACAGGGCGCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTC                         <  1:356468/150‑1                                                                                                                                                      GCGGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAG         <  1:1201048/150‑1                                                                                                                                                       CGGCCGTTTTTTGTTGCCTGTGACGGACCCTTCGCGGCTAACCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATTGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGG        <  2:501467/150‑1                                                                                                                                                        GGCCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGC       <  2:3057500/150‑1                                                                                                                                                          CCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGT     <  1:750569/150‑1                                                                                                                                                          CCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGT     >  1:647405/1‑150                                                                                                                                                          CCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCC                                                                         >  2:1577581/1‑82                                                                                                                                                          CCTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCC                                                                         <  1:1577581/82‑1                                                                                                                                                           CTTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTC    >  1:1776758/1‑150                                                                                                                                                            TTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGGTATAGGCGTCC   >  2:2266418/1‑150                                                                                                                                                            TTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCC   <  1:2793974/150‑1                                                                                                                                                            TTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGG                                                                           >  1:3009154/1‑78                                                                                                                                                            TTTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGG                                                                           <  2:3009154/78‑1                                                                                                                                                             TTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCg  <  2:2111802/150‑2                                                                                                                                                                                                                                                                                                                    GAACTGGTGGCCAAGCAGCAGCAACAGCAGAAGCAGTTCGGCTGACAGGGCCATATAACCCGCTCCTACGGGCCTGTGGTGAACCTGCGGGCTTGCCCGCGAAAGGGCCATCACAGGCCACAAAAAAAGGCCGCACCCT‑TCACAGGGCGCGGCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/343048‑342893 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggccttTTTTTGTGGCCTGTGATGGCCCTTTCGCGGGCAAGCCCGCAGGTTCACCACAGGCCCGTAGGAGCGGGTTATATGGCCCTGTCAGCCGAACTGCTTCTGCTGTTGCTGCTGCTTGGCCACCAGTTCGGAAGCGGCGATATAGGCGTCCT  >  NC_002947/342923‑343071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.