| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 353061 = | 50 (0.440) | 19 (0.220) | 14/186 | NT | 41.3% | intergenic (+25/+93) | hisF/cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| ? | NC_002947 | 353133 = | 16 (0.180) | intergenic (+97/+21) | hisF/cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein | |||||
CTGCAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/353234‑353061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcgtgcccgcgaagggcCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAGTGCCTCACGC > NC_002947/353133‑353280 CTGCAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTG < 1:1834656/150‑1 GGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGT < 2:1820181/144‑1 GGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGT > 1:1820181/1‑144 ATAACGACAGGGTGGTAGGGATACTCGGGGATACCGAGCTTTACCACGGGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGG < 1:2728605/150‑1 TAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGG < 1:2045078/150‑1 CGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGT < 1:3016944/150‑1 CGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGT < 1:1470726/150‑1 ACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGC < 2:621696/150‑1 TTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGG < 1:1153639/111‑1 TTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGG > 2:1153639/1‑111 CTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGC > 1:1720754/1‑102 CTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGC < 2:1720754/102‑1 GGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCC > 2:368301/1‑102 GGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCC < 1:368301/102‑1 CACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGG > 1:1960146/1‑79 CACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGG < 2:1960146/79‑1 ACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCG > 2:2712317/1‑150 CCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTAT < 1:2712317/150‑1 CGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCG < 1:1937271/115‑1 CGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCG > 2:1937271/1‑115 GCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCC > 2:2309356/1‑150 CTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCGATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCT > 1:2220896/1‑150 TCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCGAAGCGG > 1:2874279/1‑61 TCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCGAAGCGG < 2:2874279/61‑1 TCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTG > 2:1767001/1‑150 TCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGC < 2:1559353/62‑1 TCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGC > 1:1559353/1‑62 CCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCTGCAAAGCAGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCA > 2:2859314/1‑150 CCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCG < 2:2978190/110‑1 CCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCG > 1:2978190/1‑110 CCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCG > 2:3043344/1‑98 CCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCG < 1:3043344/98‑1 CACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTG > 2:1648413/1‑99 CACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTG < 1:1648413/99‑1 ACAGAGATCTCAGCAAACCTGTGGGAGCGGGAGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGC > 2:1894695/1‑150 GGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATA > 2:2392814/1‑150 GGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATA > 1:1276030/1‑150 GGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATA > 1:604718/1‑150 GGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATA > 1:604530/1‑150 AGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAAC < 2:3016944/150‑1 CGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGA < 2:1834656/150‑1 CGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGA > 2:1632287/1‑150 GCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTG < 2:1345833/68‑1 GCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTG > 1:1345833/1‑68 GCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCA < 2:1470726/150‑1 GCCCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCA < 1:2309356/150‑1 CCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGGATCCCCACCACCCTGTC < 2:676919/101‑1 CCGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCACGAGGAGCCCCACCACCCTGTC > 1:676919/1‑101 CGCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAGTG > 1:2155237/1‑150 GCGAAGGGCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAGTGC > 2:1327602/1‑150 GCCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAGTGCCTCACGC > 1:1713401/1‑150 CTGCAGGATAACGACAGGGTGGTGGGGATACTCGGGGATACCGAGCTTTACCACGCGCTGCTCGGCAAGAACCACGGTTGAAGCAATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGAGATCTCAGCAAACCTGTGGGAGCGGGCGTGCCCGCGAAGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/353234‑353061‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcgtgcccgcgaagggcCGCGAAGCGGCCCCAATTGCTTCAACCGTGGTTCTTGCCGAGCAGCGCGTGGTAAAGCTCGGTATCCCCGAGTATCCCCACCACCCTGTCGTTATCCTGCAGCACCAGCTTGTTGCCGGTTTGATAACGAATCTGCAGTGCCTCACGC > NC_002947/353133‑353280 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |