New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 623991	91 (0.790)	5 (0.050)	4/228	NT	5.3%	intergenic (‑308/+217)	PP_0536/PP_0537	hypothetical protein/transcriptional regulator
	?	NC_002947	= 623996	93 (0.870)					intergenic (‑313/+212)	PP_0536/PP_0537	hypothetical protein/transcriptional regulator

CGAAATATCAACTTGATTTCTATATGCGCGACGAGAAGAAGCCGACACCCCAGAATCGCTTGCGGGCTGAACGTGAACAGCGGGGGGGGCTGAGCACAACGGGAGGTGTCAACCTTATGCAGGACGGGGCATTGCCAAATTAAAAAGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/623840‑623991 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccggcCACAAGCCGGCTTTTTAATTTGGCAATGCCCCGTCCTGCATAAGGTTGACACCTCCCGTTGTGCTCAGCCCCCCCCGCTGTTCACGTTCAGCCCGCAAGCGATTCTGGGGTGTCGGCTTCTTCTCGTCGCGCATATAGAAATCAAGT  <  NC_002947/623996‑623850                                                                                                                                                                                                                                                                                                             CGAAATATCAACTTGATTTCTATATGCGCGACGAGAAGAAGCCGACACCCCAGAATCGCTTGCGGGCTGAACGTGAACAGCGGGGGGGGCTGAGCACAACGGGAGGTGTCAACCTTATGCAGGACGGGGCATTGCCAAATTAAAAAGCCG                                                                                                                                                       <  1:2161016/150‑1  GAAATATCAACTTGATTTCTATATGCGCGACGAGAAGAAGCCGACACCCCAGAATCGCTTGCGGGCTGAACGTGAACAGCGGGGGGGGCTAAGCACAACGGGAGGTGTCAACCTTATGCAGGACGGGGCATTGCCAAATTAAAAAGCCGG                                                                                                                                                      <  1:540085/150‑1                 TTTCTATATGCGCGACGAGAAGAAGCCGACACCCCAGAATCGCTTGCGGGCTGAACGTGAACAGCGGGGGGGGCTGAGCACAACGGGAGGTGTCAACCTTATGCAGGACGGGGCATTGCCAAATTAAAAAGCCGGCCACAAGCCGGCTTT                                                                                                                                       <  2:802639/150‑1                                                                                   GGGGGGGCTGAGCACAACGGGAGGTGTCAACCTTATGCAGGACGGGGCATTGCCAAATTAAAAAGCCGGCCtg                                                                                                                                                  <  1:3064960/73‑3                                                                                     GGGGGCTGAGCACAACGGGAGGTGTCAACCTTATGCAGGACGGGGCATTGCCAAATTAAAAAGCCGG                                                                                                                                                      <  1:610882/67‑1                                                                                     GGGGGCTGAGCACAACGGGAGGTGTCAACCTTATGCAGGACGGGGCATTGCCAAATTAAAAAGCCGG                                                                                                                                                      >  2:610882/1‑67                                                                                                               AACCTTATGCAGGACGGGGCATTGCCAAATTAAAAAGCCGGCCACAAGCCGGCTTTTTAATTT                                                                                                                                <  1:740105/63‑1                                                                                                               AACCTTATGCAGGACGGGGCATTGCCAAATTAAAAAGCCGGCCACAAGCCGGCTTTTTAATTT                                                                                                                                >  2:740105/1‑63                                                                                                                                         AAATTAAAAAGCCGGCTTGTGGCCGGCTTTTTAATTTGGCAATGCCCCGTCCTGCATAAGGTTGACACCTCCCGTTGTGCTCAGCCCCCCCCGCTGTTC                                                                  <  1:45587/99‑1                                                                                                                                         AAATTAAAAAGCCGGCTTGTGGCCGGCTTTTTAATTTGGCAATGCCCCGTCCTGCATAAGGTTGACACCTCCCGTTGTGCTCAGCCCCCCCCGCTGTTC                                                                  >  2:45587/1‑99                                                                                                                                                   GCCGGCCACAAGCCGGCTTTTTAATTTGGCAATGCCCCGTCCTGCATAAGGTTGACACCTCCCGTTGTGCTCAGCCCCCCCCGCTGTTCACGTTCAGCCCGCAAGCGATTCTGGGGTGTCGGCTT                              <  1:3069545/125‑1                                                                                                                                                   GCCGGCCACAAGCCGGCTTTTTAATTTGGCAATGCCCCGTCCTGCATAAGGTTGACACCTCCCGTTGTGCTCAGCCCCCCCCGCTGTTCACGTTCAGCCCGCAAGCGATTCTGGGGTGTCGGCTT                              >  2:3069545/1‑125                                                                                                                                                    CCGGCCACAAGCCGGCTTTTTAATTTGGCAATGCCCCGTCCTGCATAAGGTTGACACCTCCCGTTGTGCTCAGCCCCCCCCGCTGTTCACGTTCAGCCCGCAAGCGATTCTGGGGTGTCGGCTTCTTCTCGTCGCGCATATAGAAATCAA    >  1:2209440/1‑150                                                                                                                                                     CGGCCACAAGCCGGCTTTTTAATTTGGCAATGCCCCGTCCTGCATAAGGTTGACACCTCCCGTTGTGCTCAGCCCCCCCCGCTGTTCACGTTCAGCCCGCAAGCGATTCTGGGGTGTCGGCTTCTTCTCGTCGCGCATATAGAAATCAAG   <  1:2265646/150‑1                                                                                                                                                      GGCCACAAGCCGGCTTTTTAATTTGGCAATGCCCCGTCCTGCATAAGGTTGACACCTCCCGTTGTGCTCAGCCCCCCCCGCTGTTCACGTTCAGCCCGCAAGCGATTCTGGGGTGTCGGCTTCTTCTCGTCGCGCATATAGAAATCAAGT  >  2:1055341/1‑150                                                                                                                                                                                                                                                                                                             CGAAATATCAACTTGATTTCTATATGCGCGACGAGAAGAAGCCGACACCCCAGAATCGCTTGCGGGCTGAACGTGAACAGCGGGGGGGGCTGAGCACAACGGGAGGTGTCAACCTTATGCAGGACGGGGCATTGCCAAATTAAAAAGCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/623840‑623991 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aagccggcCACAAGCCGGCTTTTTAATTTGGCAATGCCCCGTCCTGCATAAGGTTGACACCTCCCGTTGTGCTCAGCCCCCCCCGCTGTTCACGTTCAGCCCGCAAGCGATTCTGGGGTGTCGGCTTCTTCTCGTCGCGCATATAGAAATCAAGT  <  NC_002947/623996‑623850

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.