New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 726912	101 (0.880)	6 (0.050) +TT	4/240	NT	6.2%	intergenic (‑156/+111)	PP_0620/PP_0621	GntR family transcriptional regulator/hypothetical protein
	?	NC_002947	5571473 =	82 (0.720)					intergenic (+44/+97)	queG/yicG	epoxyqueuosine reductase/inner membrane protein

CTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/726822‑726912 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGC  >  NC_002947/5571473‑5571531                                                                                            ||                                                            CTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGG        >  1:2290060/1‑146 CTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGG        <  2:2290060/146‑1                                                           ACGAAATTGCAGATAAAAACTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGC  >  1:1401348/1‑94                                                           ACGAAATTGCAGATAAAAACTGTGGGAGCGGGCTTGCCCGCGAAGCAGGCACCACGGTGTATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGC  <  2:1401348/94‑1                                                                                 TGGGAGCGGGCGTGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGG        <  1:2214833/66‑1                                                                                 TGGGAGCGGGCGTGCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGG        >  2:2214833/1‑66                                                                                            ||                                                            CTGGCGGGGGGGAGGGGTCGTAAATGGTGTGAAAGGGTCGGGGAGGGATATGTGGAACACGAAATTGCAGATAAAAACTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/726822‑726912 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCCGCGAAGCAGGCAACACAGGGAATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGC  >  NC_002947/5571473‑5571531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.