New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	958383 =	91 (0.790)	5 (0.050)	5/218	NT	5.7%	intergenic (+27/‑166)	ykgJ/PP_0820	ferredoxin/acetyltransferase
	?	NC_002947	958422 =	83 (0.810)					intergenic (+66/‑127)	ykgJ/PP_0820	ferredoxin/acetyltransferase

TCCTGTCCATTGCTGGGGAGATGACAGTTTAACGTCAAGTGCAGGGTTCAGGCATCTCGGGCAGCTTTGCAGCCCGTCGCCGGCAGGTTCACCACAGGCCAGGAGCCTTGCACGCTACCTGTGGAAGCGGCCCCGCGTCGCAAAAGGCCGCTTCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/958540‑958383 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgcttccacaGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCC  >  NC_002947/958422‑958570                                                                                                                                                                                                                                                                                                                     TCCTGTCCATTGCTGGGGAGATGACAGTTTAACGTTAAGTGCAGGGTTCAGGCATCTCGGGCAGCTTTGCAGCCCGTCGCCGGCAGGTTCACCACAGGCCAGGAGCCTTGCACGCTACCTGTGGAAGCGGCCCCGCGTCGCAAAAGGCCG                                                                                                                                                               <  1:1258624/150‑1  CCTGTCCATTGCTGGGGAGATGACAGTTTAACGTCAAGTGCAGGGTTCAGGCATCTCGGGCAGCTTTGCAGCCCGTCGCCGGCAGGTTCACCACAGGCCAGGAGCCTTGCACGCTACCTGTGGAAGCGGCCCCGCGTCGCAAAAGGCCGC                                                                                                                                                              <  2:97398/150‑1   CTGTCCATTGCTGGGGAGATGACAGTTTAACGTCAAGTGCAGGGTTCAGGCATCTCGGGCAGCTTTGCAGCCCGTCGCCGGCAGGTTCACCACAGGCCAGGAGCCTTGCACGCTACCTGTGGAAGCGGCCCCGCGTCGCAAAAGGCCGCT                                                                                                                                                             >  2:2789521/1‑150    TGTCCATTGCTGGGGAGATGACAGTTTAACGTCAAGTGCAGGGTTCAGGCATCTCGGGCAGCTTTGCAGCCCGTCGCCGGCAGGTTCACCACAGGCCAGGAGCCTTGCACGCTACCTGTGGAAGCGGCCCCGCGTCGCAAAAGGCCGCTT                                                                                                                                                            >  1:2869618/1‑150        CATTGCTGGGGAGATGACAGTTTAACGTCAAGTGCAGGGTTCAGGCATCTCGGGCAGCTTTGCAGCCCGTCGCCGGCAGGTTCACCACAGGCCAGGAGCCTTGCACGCTACCTGTGGAAGCGGCCCCGCGTCGCAAAAGGCCGCTTCCAC                                                                                                                                                        >  2:704513/1‑150              TGGGGAGATGACAGTTTAACGTCAAGTGCAGGGTTCAGGCATCTCGGGCAGCTTTGCAGCCCGTCGCCGGCAGGTTCACCACAGGCCAGGAGCCTTGCACGCTACCTGTGGAAGCGGCCCCGCGTCGCAAAAGGC                                                                                                                                                                 <  2:576926/135‑1              TGGGGAGATGACAGTTTAACGTCAAGTGCAGGGTTCAGGCATCTCGGGCAGCTTTGCAGCCCGTCGCCGGCAGGTTCACCACAGGCCAGGAGCCTTGCACGCTACCTGTGGAAGCGGCCCCGCGTCGCAAAAGGC                                                                                                                                                                 >  1:576926/1‑135                                                            GGCAGCTTTGCAGCCCGTCGCCGGCAGGTTCACCACAGGCCAGGAGCCTTGCACGCTACCTGTGGAAGCGGCCCCGCGTCGCAAAAG                                                                                                                                                                   >  1:1954359/1‑87                                                            GGCAGCTTTGCAGCCCGTCGCCGGCAGGTTCACCACAGGCCAGGAGCCTTGCACGCTACCTGTGGAAGCGGCCCCGCGTCGCAAAAG                                                                                                                                                                   <  2:1954359/87‑1                                                                                                                    TACCTGTGGAAGCGGCCCCGCGTCGCAAAAGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGA                                                                                        <  1:2552200/106‑1                                                                                                                    TACCTGTGGAAGCGGCCCCGCGTCGCAAAAGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGA                                                                                        >  2:2552200/1‑106                                                                                                                            GAAGCGGCCCCGCGTCGCAAAAGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCC                                                                                           >  2:1843557/1‑95                                                                                                                            GAAGCGGCCCCGCGTCGCAAAAGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCC                                                                                           <  1:1843557/95‑1                                                                                                                               GCGGCCCCGCGTCGCAAAAGGCCGCTTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGG                                 >  1:124464/1‑150                                                                                                                                                        TTCCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCA        <  1:97188/150‑1                                                                                                                                                          CCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGA                                     >  2:196592/1‑119                                                                                                                                                          CCACAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGA                                     <  1:196592/119‑1                                                                                                                                                             CAGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTC   <  2:492936/150‑1                                                                                                                                                              AGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCC  >  2:1257894/1‑150                                                                                                                                                              AGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCC                                               >  1:2038477/1‑105                                                                                                                                                                                                                                                                                                                     TCCTGTCCATTGCTGGGGAGATGACAGTTTAACGTCAAGTGCAGGGTTCAGGCATCTCGGGCAGCTTTGCAGCCCGTCGCCGGCAGGTTCACCACAGGCCAGGAGCCTTGCACGCTACCTGTGGAAGCGGCCCCGCGTCGCAAAAGGCCGCTTCCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/958540‑958383 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccgcttccacaGGTAGCGTGCAAGGCTCCTGGCCTGTGGTGAACCTGCCGGCGACGGGCTGCAAAGCTGCCCGAGATGCCTGAACCCTGCACTTGACGTTAAACTGTCATCTCCCCAGCAATGGACAGGAGATCCGGCGTGACCCCACCCCGCAGTTTCC  >  NC_002947/958422‑958570

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.