New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1126618	36 (0.310)	11 (0.120)	8/202	NT	25.1%	intergenic (‑67/+83)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase
	?	NC_002947	= 1126634	36 (0.380)					intergenic (‑83/+67)	tdcG‑II/gcvP‑I	L‑serine dehydratase/glycine dehydrogenase

GCAGCCCTTCGGCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1126449‑1126618 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggtttacccgcgaatgcgATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAGCTCCCACACGGTCGGC  <  NC_002947/1126634‑1126486                                                                                                                                                                                                                                                                                                                                 GCAGCCCTTCGGCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCG                                                                                                                                                                           >  1:59808/1‑150      CCTTCGGCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGT                                                                                                                                                                      <  2:59808/150‑1      CCTTCGGCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGG                                                                                                                                                                        <  2:2551393/148‑1      CCTTCGGCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGG                                                                                                                                                                        >  1:2551393/1‑148       CTTCGGCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTa                                                                                                                                                                     >  1:457053/1‑149       CTTCGGCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTT                                                                                                                                                                     <  2:820510/150‑1        TTCGGCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTT                                                                                                                                                                    >  2:601098/1‑150        TTCGGCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTT                                                                                                                                                                    >  1:324121/1‑150            GCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCC                                                                                                                                                                <  1:601098/150‑1            GCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCC                                                                                                                                                                >  2:2910771/1‑150            GCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGCTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCC                                                                                                                                                                >  2:2100453/1‑150                 CCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAA                                                                                                                                                           >  2:783413/1‑150                 CCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGAACTCCTGCTAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTAAACCCGCGcc                                                                                                                                                           <  1:1150507/150‑3                  CGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAAT                                                                                                                                                          >  1:2603172/1‑150                             GCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGC                                                                                                                                               >  1:778131/1‑150                                  TCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTAC                                                                                                                                                                  >  2:493272/1‑126                                  TCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTAC                                                                                                                                                                  <  1:493272/126‑1                                         GACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCA                                                                                                                                   <  1:2904862/150‑1                                            CGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTC                                                                                                                                <  2:169754/150‑1                                                TGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGG                                                                                                                            <  2:2603172/150‑1                                                TGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATCCCTCCGCATTCGCGG                                                                                                                            <  2:778131/150‑1                                                                 GATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGT                                                                                                                                                                      <  1:2335310/91‑1                                                                 GATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGT                                                                                                                                                                      >  2:2335310/1‑91                                                                                   GTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGG                                                                                                                            >  2:1421483/1‑115                                                                                   GTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGG                                                                                                                            <  1:1421483/115‑1                                                                                   GTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATT                                                                                                                                 >  1:1999266/1‑110                                                                                   GTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATT                                                                                                                                 <  2:1999266/110‑1                                                                                                            ACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGC                                                                                                                              >  2:3029365/1‑88                                                                                                            ACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGC                                                                                                                              <  1:3029365/88‑1                                                                                                                                                      GCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGC                                                                                                                >  1:1224093/1‑60                                                                                                                                                      GCGGGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGC                                                                                                                <  2:1224093/60‑1                                                                                                                                                         GGTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACACCCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCA                   <  2:2403204/150‑1                                                                                                                                                          GTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAG                  >  2:1675199/1‑150                                                                                                                                                          GTTTACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAG                  >  2:2416694/1‑150                                                                                                                                                              ACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAGCTCC              <  2:905665/150‑1                                                                                                                                                              ACCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAGCTCC              >  2:1928315/1‑150                                                                                                                                                               CCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAGCTCCC             <  1:1675199/150‑1                                                                                                                                                               CCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCA                                                                     <  1:566704/94‑1                                                                                                                                                               CCCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCA                                                                     >  2:566704/1‑94                                                                                                                                                                gtcgaAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCTCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAGCTCCCc            >  1:2410412/6‑149                                                                                                                                                                CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAATAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAGCTCCCA            >  2:454218/1‑150                                                                                                                                                                CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAGCTCCCA            >  2:866010/1‑150                                                                                                                                                                CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAGCTCCCA            >  1:1789481/1‑150                                                                                                                                                                CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAGCTCCCA            >  2:1013205/1‑150                                                                                                                                                                CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACC                                              >  2:1825630/1‑116                                                                                                                                                                CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACC                                              <  1:1825630/116‑1                                                                                                                                                                CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGAC                                               <  1:643158/115‑1                                                                                                                                                                CCGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGAC                                               >  2:643158/1‑115                                                                                                                                                                 CGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAGCTCCCAC           >  1:1552998/1‑150                                                                                                                                                                 CGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGC                                                        >  1:2731450/1‑105                                                                                                                                                                 CGCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGC                                                        <  2:2731450/105‑1                                                                                                                                                                  GCGAATGCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAGCTCCCACA          >  2:1176238/1‑150                                                                                                                                                                        GCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGG                                                                                <  2:791176/74‑1                                                                                                                                                                        GCGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGG                                                                                >  1:791176/1‑74                                                                                                                                                                         CGATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGATCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAGCTCCCCCACGGTCGG   >  1:438606/1‑150                                                                                                                                                                          GATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAGCTCCCACACGGTCGGC  >  1:985910/1‑150                                                                                                                                                                                                                                                                                                                                 GCAGCCCTTCGGCAAACCGCGCAGCGGCGCGCATCGGGCCGACCGTGTGGGAGCTGGAGGGGCCGATGCCGATCTTGAACAGGTCGAAGACGCTCAGTGACATGTGGACCTCCTGCCAGGTTGTTGGGTGGACATTGAGCCCTGTAGGCGCGGGTTTACCCGCGAATGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1126449‑1126618 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgggtttacccgcgaatgcgATGGTGGCTATACCTCCGCATTCGCGGGTAAACCCGCGCCTACAGGGCTCAATGTCCACCCAACAACCTGGCAGGAGGTCCACATGTCACTGAGCGTCTTCGACCTGTTCAAGATCGGCATCGGCCCCTCCAGCTCCCACACGGTCGGC  <  NC_002947/1126634‑1126486

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.