| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1138550 | 122 (1.070) | 6 (0.060) | 6/216 | NT | 5.2% | intergenic (‑75/+90) | arcC/arcB | carbamate kinase/ornithine carbamoyltransferase |
| ? | NC_002947 | = 1138611 | 112 (1.110) | intergenic (‑136/+29) | arcC/arcB | carbamate kinase/ornithine carbamoyltransferase | |||||
GCGGATATTGGCGCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1138389‑1138550‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGCGAACTCCGCAGCTTCCGTGCAGCGACAGTCCATTCATTCTTTCGCTAAAGGACATTCCACATGCGTATCG < NC_002947/1138611‑1138466 GCGGATATTGGCGCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCT > 1:286710/1‑150 GGATATTGGCGCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGT > 2:1913306/1‑150 GATATTGGCGCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTG < 1:2740708/150‑1 GGCGCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCG < 1:980600/150‑1 GCGCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGG < 1:2019861/150‑1 GCGCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGG < 1:2810178/150‑1 GTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCCCTGT > 1:2109401/1‑134 GTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCCCTGT < 2:2109401/134‑1 TCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCGTGCCCGCGA > 1:1608933/1‑150 CGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTG < 1:1459327/127‑1 CGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTG > 2:1459327/1‑127 GCAGGGCGTTGCCGCCCAATGCAACAACGATACGCACGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGG < 1:1389521/105‑1 GCAGGGCGTTGCCGCCCAATGCAACAACGATACGCACGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGG > 2:1389521/1‑105 CAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGG > 1:563868/1‑109 CAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGG < 2:563868/109‑1 TGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGG < 2:1608933/150‑1 CAACGATACGCATGTGGAATGTCC‑TTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGC > 1:2289249/1‑150 GAATGTCC‑TTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGCGAA < 2:2289249/150‑1 TCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGC < 2:825642/103‑1 TCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGC > 1:825642/1‑103 CTGTGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGCGAACTCCGCAGCTTCCGTGCAGCGACAGTCCATTCATTCTTTCGCTAAAGGACATTCCAC < 1:382830/150‑1 TGTGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAG > 2:1657649/1‑53 TGTGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAG < 1:1657649/53‑1 GTGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGCGAACTCCGCAGCTTCCGTGCAGCGACAGTCCATTCATTCTTTCGCTAAAGGACATTCCACAT < 1:338961/150‑1 TGGGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGCGAACTCCGCAGCTTCCGTGCAGCGACAGTCCATTCATTCTTTCGCTAAAGGACATTCCACATG > 2:2321208/1‑150 GGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGCGAACTCCGCAGCTTCCGTGCAGCGACAGTCCATTCATTCTTTCGCTAAAG < 1:638629/135‑1 GGAGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGCGAACTCCGCAGCTTCCGTGCAGCGACAGTCCATTCATTCTTTCGCTAAAG > 2:638629/1‑135 AGCGGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGCGAACTCCGCAGCTTCCGTGCAGCGACAGTCCATTCATTCTTTCGCTAAAGGACATTCCACATGCGTA > 2:1406188/1‑150 GGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGCGAACTCCGCAGCTTCCGTGCAGCGACAGTCCATTCATTCTTTCGCTAAAGGACATTCCACATGCGTATCG > 1:1970400/1‑150 GGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGCGAACTCCGCAGCTTCCGTGCAGCGACAGTCCATTCATTCTTTCGCTAAAGGACATTC < 1:634059/137‑1 GGGCGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGCGAACTCCGCAGCTTCCGTGCAGCGACAGTCCATTCATTCTTTCGCTAAAGGACATTC > 2:634059/1‑137 GCGGATATTGGCGCGCTGGTTGTCAGCGGTCATGGGCTCGCCGCGACGAAGCAGGGCGTTGCCGCCCAATGCAACAACGATACGCATGTGGAATGTCCTTTAGCGAAAGAATGAATGGACTGTCGCTGCACGGAAGCTGCGGAGTTCGCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1138389‑1138550‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtgggagcgggcGTGCCCGCGAAGGCGTCAGCCGCATCATCGATGATGTCAGGTCTGGCCTCTTCGCGGGCATGCCCGCTCCCACAGCGAACTCCGCAGCTTCCGTGCAGCGACAGTCCATTCATTCTTTCGCTAAAGGACATTCCACATGCGTATCG < NC_002947/1138611‑1138466 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |