New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1311736	78 (0.680)	5 (0.050)	5/226	NT	6.2%	intergenic (‑198/+80)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA
	?	NC_002947	= 1311773	79 (0.750)					intergenic (‑235/+43)	PP_1144/rapA	membrane protein/RNA polymerase‑associated protein RapA

CCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1311580‑1311736 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgaaCACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATTGTGCCATTAGTCAGGAAGG  <  NC_002947/1311773‑1311625                                                                                                                                                                                                                                                                                                                    CCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGC                                                                                                                                                              >  2:2328923/1‑150     GTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGC                                                                                                                                                          <  1:2328923/150‑1                 CAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGC                                                                                                                                                              <  1:2399705/134‑1                 CAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGC                                                                                                                                                              >  2:2399705/1‑134                                         TTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCTCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGGGG                                                                                                                      >  1:883724/1‑150                                           AAGCCTTCCTGACTAATGGCACAATTATTTCTACTATTTGATTATACCTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATCCCTTCCTGTGGGAGCGGGCGAGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGAT                                                                                                                    <  2:883724/150‑1                                              CCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCT                                                                                                                 <  2:1489759/150‑1                                                    TGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGG                                                                                                           <  2:1416483/150‑1                                                    TGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGG                                                                                                           >  1:1416483/1‑150                                                                                                                                                      tCCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTCGAGTTATAACCAAATCGTAGAAATCATTGTGCCATTAGTC         <  1:243864/149‑1                                                                                                                                                       CCGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATTGTGCCATTAGTCA        >  2:2587037/1‑150                                                                                                                                                        CGCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAAGCGAATCGTAGAAATCATTGTGCCATTAGTCAa       >  2:243864/1‑149                                                                                                                                                         GCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATA                                         <  1:2472421/115‑1                                                                                                                                                         GCGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATA                                         >  2:2472421/1‑115                                                                                                                                                          CGAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATTGTGCCATTAGTCAGGA     <  2:1845228/150‑1                                                                                                                                                           GAACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATTGTGCCATTAGTCAGGAA    <  2:1526984/150‑1                                                                                                                                                             ACACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATTGTGCCATTAGTCAGGAAGG  <  2:1501861/150‑1                                                                                                                                                                                                                                                                                                                    CCCTGTGCAGACTGTCCAGAGGCAGTATAGGAAGGAGTACTTAAGCCTTCCTGACTAATGGCACAATGATTTCTACGATTTGGTTATAACTCCAATCGCAGTGAGGAATAAATTTGGGGCCCTAATGCCTTCCTGTGGGAGCGGGCGAGCCCGCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1311580‑1311736 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccgcgaaCACCGGCAAAGCCGGTGGCATCCACCGCAGTGGATGCTTCGCGGGCTCGCCCGCTCCCACAGGAAGGCATTAGGGCCCCAAATTTATTCCTCACTGCGATTGGAGTTATAACCAAATCGTAGAAATCATTGTGCCATTAGTCAGGAAGG  <  NC_002947/1311773‑1311625

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.