New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1351930 =	86 (0.750)	7 (0.060)	7/230	NT	8.0%	intergenic (‑140/+302)	nrdB/PP_1178	ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein
	?	NC_002947	1351958 =	80 (0.740)					intergenic (‑168/+274)	nrdB/PP_1178	ribonucleoside‑diphosphate reductase subunit beta/hypothetical protein

CCCGCTTCGTGAACGGACGCACGCCAAACCGGTCAAAAAAGTTACCCTCGCCGGCAAGACACGCGCCCCGATCGAAGGTGAATTCCGGTATACTTTGCGCCCTCTGAAAAGAGCACCTATTCAATTGTCCTGGCCCCTCCCAGAGGCCTGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1352085‑1351930 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaggACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTGCGTCCGTTCACGAAGCGGGTGGCTTCTTCTACGGGGG  >  NC_002947/1351958‑1352103                                                                                                                                                                                                                                                                                                                CCCGCTTCGTGAACGGACGCACGCCAAACCGGTCAAAAAAGTTACCCTCGCCGGCAAGACACGCGCCCCGATCGAAGGTGAATTCCGGTATACTTTGCGCCCTCTGAAAAGAGCACCTATTCAATTGTCCTGGCCCCTCCCAGAGGCCTG                                                                                                                                                          >  1:2682502/1‑150     CTTCGTGAACGGACGCACGCCAAACCGGTCAAAAAAGTTACCCTCGCCGGCAAGACACGCGCCCCGATCGAAGGTGAATTCCGGTATACTTTGCGCCATCTGAAAAGAGCACCTATTCAATTGTCCTGGCCCCTCCCAGAGGCCTGGCCA                                                                                                                                                      <  1:1119262/150‑1       TCGTGAACGGACGCACGCCAAACCGGTCAAAAAAGTTACCCTCGCCGGCAAGACACGCGCCCCGATCGAAGGTGAATTCCGGTATACTTTGCGCCCTCTGAAAAGAGCACCTATTCAATTGTCCTGGCCCCTCCCAGAGGCCTGGCCAGG                                                                                                                                                    <  2:682060/150‑1                                              CCTCGCCGGCAAGACACGCGCCCCGATCGAAGGTGAATTCCGGTATACTTTGCGCCCTCTGAAAAGAGCACCTATTCAATTGTCCTGGCCCCTCCCAGAGGCCTGGCCA                                                                                                                                                      <  2:443837/109‑1                                              CCTCGCCGGCAAGACACGCGCCCCGATCGAAGGTGAATTCCGGTATACTTTGCGCCCTCTGAAAAGAGCACCTATTCAATTGTCCTGGCCCCTCCCAGAGGCCTGGCCA                                                                                                                                                      >  1:443837/1‑109                                                                                                                    CCTATTCAATTGTCCTGGCCCCTCCCAGAGGCCTGGCCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGGTTGGCGTG                                       >  1:264720/1‑150                                                                                                                             TTGTCCTTGCCCCTCCCAGAGGCCTGGCCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTGCGTCCGTTC                              >  1:2466987/1‑150                                                                                                                                TCCTGGCCCCTCCCAGAGGCCT‑‑‑‑‑GGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTT                                                      <  1:2600839/118‑1                                                                                                                                TCCTGGCCCCTCCCAGAGGCCT‑‑‑‑‑GGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTT                                                      >  2:2600839/1‑118                                                                                                                                    GGCCCCTCCCAGAGGCCTGGCCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGC                                                                                                                      >  1:527/1‑55                                                                                                                                    GGCCCCTCCCAGAGGCCTGGCCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGC                                                                                                                      <  2:527/55‑1                                                                                                                                        CCTCCCAGAGGCCTGGCCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTGCGTCCGTTCACGAAGCGGGT                   <  2:2466987/150‑1                                                                                                                                                      GGCCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTGCGTCCGTTCACGAAGCGGGTGGCTTCTTCTACGG     <  1:1762829/150‑1                                                                                                                                                       GCCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTGCGTCCGTTCACGAAGCGGGTGGCTTCTTCTACGGG    >  2:45384/1‑150                                                                                                                                                       GCCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTGCGTCCGTTCACGAAGCGGGTGGCTTCTTCTACGGG    <  2:1843103/150‑1                                                                                                                                                       GCCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTGCGTCCGTTCACGAAGCGGGTGGCTTCTTCTACGGG    >  1:1770335/1‑150                                                                                                                                                       GCCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTGCGTCCGTTCACGAAGCGGGTGGCTTATTCTACGGG    >  1:910435/1‑150                                                                                                                                                       GCCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGG                                                                 <  2:361031/89‑1                                                                                                                                                       GCCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGAGGGCGAGG                                                                 >  1:361031/1‑89                                                                                                                                                       GCCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTC                                                                                             >  1:2667872/1‑61                                                                                                                                                       GCCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTC                                                                                             <  2:2667872/61‑1                                                                                                                                                        CCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTGCGTCCGTTCACGAAGCGGGTGGCTTCTTCTACGGGG   <  1:45384/150‑1                                                                                                                                                        CCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTGCGTCCGTTCACGAAGCGGGTG                  >  1:263433/1‑135                                                                                                                                                        CCAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTGCGTCCGTTCACGAAGCGGGTG                  <  2:263433/135‑1                                                                                                                                                         CAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTTCGT                                    <  1:2183766/116‑1                                                                                                                                                         CAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTTCGT                                    >  2:2183766/1‑116                                                                                                                                                         CAGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTGCGTCCGTTCACGAAGCGGGTGGCTTCTTCTACGGGGG  <  2:1770335/150‑1                                                                                                                                                          AGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTT                                                       >  1:418606/1‑96                                                                                                                                                          AGGACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTT                                                       <  2:418606/96‑1                                                                                                                                                            GACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGT                                                                                                               >  2:263405/1‑38                                                                                                                                                            GACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGT                                                                                                               <  1:263405/38‑1                                                                                                                                                                                                                                                                                                                CCCGCTTCGTGAACGGACGCACGCCAAACCGGTCAAAAAAGTTACCCTCGCCGGCAAGACACGCGCCCCGATCGAAGGTGAATTCCGGTATACTTTGCGCCCTCTGAAAAGAGCACCTATTCAATTGTCCTGGCCCCTCCCAGAGGCCTGGCCAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1352085‑1351930 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccaggACAATTGAATAGGTGCTCTTTTCAGAGGGCGCAAAGTATACCGGAATTCACCTTCGATCGGGGCGCGTGTCTTGCCGGCGAGGGTAACTTTTTTGACCGGTTTGGCGTGCGTCCGTTCACGAAGCGGGTGGCTTCTTCTACGGGGG  >  NC_002947/1351958‑1352103

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.