New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1426821	NA (NA)	18 (0.160)	10/234	NT	NA	coding (712/1422 nt)	PP_1250	group II intron‑encoding maturase
	?	NC_002947	= 1426852	NA (NA)					coding (743/1422 nt)	PP_1250	group II intron‑encoding maturase

GTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1426668‑1426821 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATT  <  NC_002947/1426852‑1426704                                                                                                                                                                                                                                                                                                                 GTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCA                                                                                                                                                           >  1:2118651/1‑150  TGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCAC                                                                                                                                                          <  2:1888207/150‑1  TGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCAC                                                                                                                                                          >  1:1321380/1‑150    GAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGG                                                                                                                                                        <  2:251590/150‑1     AACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC                                                                                                                                                       >  2:3048030/1‑150     AACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC                                                                                                                                                       <  2:2709/150‑1                            GATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTC                                                                                                                               <  1:1954669/150‑1                               CGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCC                                                                                                                            <  1:242378/150‑1                                        CACGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTCCTGCCGT                                                                                                                   <  1:337769/150‑1                                          CGACATCCTCATGGCCTGCATCGAACGTCGGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                                 <  2:726133/150‑1                                           aACATCCTCATGGCCTGCATCGAACTTCGGATTAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCAGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGG                                                                                                                 <  1:693646/149‑1                                                 ctgATGGCCTGTATCGAGCGCCGGGTCAAAGATAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGAC                                                                                                           <  1:2190238/147‑1                                                              TCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGT                                                                                                                   >  1:721526/1‑129                                                              TCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGT                                                                                                                   <  2:721526/129‑1                                                                       GGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGACAG‑CAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACC                                                                                                     >  2:1944797/1‑133                                                                       GGATCAAAGACAAGTGCGTACTCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGACAG‑CAACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACC                                                                                                     <  1:1944797/133‑1                                                                          TCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTCCT                                                                                                                        <  2:1193125/111‑1                                                                          TCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCAGGAG‑GGGCCGCCTTGCGGCGTCCCCTCCT                                                                                                                        >  1:1193125/1‑111                                                                                            TCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCT                                                                                                              >  2:1743365/1‑104                                                                                            TCAGGCTTATTCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAAAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCT                                                                                                              <  1:1743365/104‑1                                                                                                GCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGA                                                                                                            >  1:2136136/1‑102                                                                                                GCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGA                                                                                                            <  2:2136136/102‑1                                                                                                GCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGC                                                                                                               <  1:2987786/99‑1                                                                                                GCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCAACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGC                                                                                                               >  2:2987786/1‑99                                                                                                          CGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGG                                                                                                                                                        <  1:2072793/48‑1                                                                                                          CGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGG                                                                                                                                                        >  2:2072793/1‑48                                                                                                                                                      ACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGT      <  2:1173229/150‑1                                                                                                                                                      ACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGA               >  1:110494/1‑141                                                                                                                                                      ACGGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGA               <  2:110494/141‑1                                                                                                                                                        GGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGTGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGA    <  1:733798/150‑1                                                                                                                                                        GGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGA    <  2:2459088/150‑1                                                                                                                                                        GGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAG                                                                         >  2:1624218/1‑81                                                                                                                                                        GGCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAG                                                                         <  1:1624218/81‑1                                                                                                                                                         GCGAGAGCGGGCCGCCTTGCGGCGTCCCCTCTTGCCGTGGGCTGACGACACCGCCCTACATGATCCCGGCTTCAAGTTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGAT   <  1:1006297/150‑1                                                                                                                                                          CGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATT  <  1:38730/150‑1                                                                                                                                                          CGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATT  <  2:705887/150‑1                                                                                                                                                          CGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATT  >  1:1267936/1‑150                                                                                                                                                          CGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGAATGTCGTGATT  <  2:2655061/150‑1                                                                                                                                                                                                                                                                                                                 GTGGAACTCGATCTGGAGAAGTTTTTCGATCGGGTCAATCACGACATCCTCATGGCCTGCATCGAACGTCGGATCAGAGACAAGTGCGTACTCAGGCTTATCCGCCGCTACCTTGAAGCCGGGATCATGTCGGGCGGTGTCGTCAGCCCACGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1426668‑1426821 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acggcGAGAGCGGGCCGCCTTGCGGCGTCCCCTCCTGCCGTGGGCTGACGACACCGCCCGACATGATCCCGGCTTCAAGGTAGCGGCGGATAAGCCTGAGTACGCACTTGTCTCTGATCCGACGTTCGATGCAGGCCATGAGGATGTCGTGATT  <  NC_002947/1426852‑1426704

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.