New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1436037 =	111 (0.970)	15 (0.140)	6/228	NT	12.1%	intergenic (‑67/+86)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase
	?	NC_002947	1436090 =	114 (1.070)					intergenic (‑120/+33)	PP_1256/PP_1257	alpha‑ketoglutarate semialdehyde dehydrogenase/1‑pyrroline‑4‑hydroxy‑2‑carboxylate deaminase

CGAACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1436189‑1436037 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCTGAGCGTCGGTCAGGACGTCGGTCTCGTTGAA  >  NC_002947/1436090‑1436233                                                                                                                                                                                                                                                                                                           CGAACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGC                                                                                                                                                     <  2:2552651/150‑1  GAACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCG                                                                                                                                                    >  1:2814253/1‑150   tACATCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGG                                                                                                                                                   <  2:647155/149‑1    ACAGGAGTACTCGCTCGTCGGCAGGTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGG                                                                                                                                                  <  2:1709667/150‑1    ACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGG                                                                                                                                                  >  1:2183468/1‑150         AGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCAGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGagatc                                                                                                                                             >  2:2411671/1‑145                        GCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGG                                                                                                                                                   >  2:1069834/1‑129                        GCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGG                                                                                                                                                   <  1:1069834/129‑1                                                                                     TGTGGGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGTGAACCCGCTCCTACAGGGGGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAA                                                                 >  2:1991893/1‑150                                                                                       TGGGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGTACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACA                                                               >  2:2019759/1‑150                                                                                        GGGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGTGAACCCGCTCCTACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGTGGAACAG                                                              >  2:2585889/1‑150                                                                                         GGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGTGAACCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGC                                                             >  2:492983/1‑150                                                                                         GGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGTGAACCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTG                                                                                  >  1:2360449/1‑129                                                                                         GGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGTGAACCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTG                                                                                  <  2:2360449/129‑1                                                                                            GCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGTGAACCCGCTCCTACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCG                                                          >  2:2935805/1‑150                                                                                                      CCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCTCAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTT                                                >  2:2206681/1‑150                                                                                                      CCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTT                                                <  2:802651/150‑1                                                                                                      CCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTT                                                >  1:802651/1‑150                                                                                                      CCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTAC                                                       <  1:3050233/143‑1                                                                                                      CCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGAGGGAACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTAC                                                       >  2:3050233/1‑143                                                                                                                GGCGACCCGGTGCATGGCACCGGCTTCGCCTG‑ATTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTG                                     >  2:2064612/1‑150                                                                                                                     CCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCT                                 >  2:309834/1‑150                                                                                                                        GGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGGTGAACCCGCTCCTACAGGGAGAGCAGTGGCCGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGTGGAACAGCGCGTACTGCTGTTCGGCATACTTGCGCTGAG                              <  1:2585889/150‑1                                                                                                                                                  TTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCTGAGCGTCGGTCAGGACGTCGGTCTCGTTG    >  2:2294950/1‑150                                                                                                                                                  TTCGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCTGAGCGTCGGTCAGGACGTCGGTCTCGTTG    >  2:577661/1‑150                                                                                                                                                    CGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCTGAGCGTCGGTCAGGACGTCGGTCTCGTTGAA  <  2:1477018/150‑1                                                                                                                                                    CGCGGGCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCTGAGCGTCGGTCAGGACGTCGGTCTCGTTGAA  <  1:595056/150‑1                                                                                                                                                                                                                                                                                                           CGAACAGCAGTACGCGCTGTTCCGCAGCTGGTATGCCAGCTGGTCGGCCGAGCAAAACATCGCCTGAGCAGCCACTGCTCTCCCTGTGGGAGCGGGCGTGCCCGCGAATCAGGCGACCCGGTGCATGGCACCGGCTTCGCCGGTGTTCGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1436189‑1436037 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcgcgggCACGCCCGCTCCCACAGGGAGAGCAGTGGCTGCTCAGGCGATGTTTTGCTCGGCCGACCAGCTGGCATACCAGCTGCGGAACAGCGCGTACTGCTGTTCGGCATAGTTGCGCTGAGCGTCGGTCAGGACGTCGGTCTCGTTGAA  >  NC_002947/1436090‑1436233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.