| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1468069 | 113 (0.990) | 7 (0.060) | 6/232 | NT | 6.1% | coding (630/1479 nt) | algE | alginate production protein AlgE |
| ? | NC_002947 | = 1468077 | 109 (1.000) | coding (622/1479 nt) | algE | alginate production protein AlgE | |||||
GTCGTTGCGCCAGTTGTAGGCGTCGCTGTTGGCCTCCAGGCCCAGCCAGGTAAGGTCGCCAGTGCGGGTCTTGTCCAGCGCGTCGACCGTTTCGCCGGGGTTCTTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCAGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1467916‑1468069‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtggACCCCTGGCCACTGGGTTGGCCTGCGCGCTCACCACACACATGACAGCGGCAGCCTGAAGAACCCCGGCGAAACGGTCGACGCGCTGGACAAGACCCGCACTGGCGACCTTACCTGGCTGGGCCTGGAGGCCAACAGCGACGCCTACAA < NC_002947/1468077‑1467929 gtaGTTGCGCCAGTTGTAGGCGTCGCTGTTGGCCTCCAGGCCCAGCCAGGTAAGGTCGCCAGTGCGGGTCTTGTCCAGCGCGTCGACCGTTTCGCCGGGGTTCTTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCA > 1:3068530/4‑150GTCGTTGCGCCAGTTGTAGGCGTCGCTGTTGGCCTCCAGGCCCAGCCAGGTAAGGTCGCCAGTGTGGGTCTTGTCCAGCGCGTCGACCGTTTCGCCGGGGTTCTTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCA < 1:2209863/150‑1GTCGTTGCGCCAGTTGTAGGCGTCGCTGTTGGCCTCCAGGCCCAGCCAGGTAAGGTCGCCAGTGCGGGTCTTGTCCAGCGCGTCGACCGTTTCGCCGGGGTTCTTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCA > 2:741088/1‑150GTCGTTGCGCCAGTTGTAGGCGTCGCTGTTGGCCTCCAGGCCCAGCCAGGTAAGGTCGCCAGTGCGGGTCTTGTCCAGCGCGTCGACCGTTTCGCCGGGGGTCGTAAGACTCCCGCAGTCATGTGTGTGGTGCGCGCACACACCACCCCc > 2:592887/1‑149 GTTGCGCCAGTTGTAGGCGTCGCTGTTGGCCTCCAGGCCCAGCCAGGTAAGGTCGCCAGTGCGGGTCTTGTCCAGCGCGTCGACCGTTTCGCCGGGGTTCTTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCAGTG < 1:449027/150‑1 TTGCGCCAGTTGTAGGCGTCGCTGTTGGCCTCCAGGCCCAGCCAGGTAAGGTCGCCAGTGCGGGTCTTGTCCAGCGCGTCGACCGTTTCGCCGGGGTTCTTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCAGTGG < 1:763619/150‑1 AGGCGTCGCTGTTGGCCTCCAGGCCCAGCCAGGTAAGGTCGCCAGTGCGGGTCTTGTCCAGCGCGTCGACCGTTTCGCCGGGGTTCTTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCAGTG > 1:284433/1‑136 AGGCGTCGCTGTTGGCCTCCAGGCCCAGCCAGGTAAGGTCGCCAGTGCGGGTCTTGTCCAGCGCGTCGACCGTTTCGCCGGGGTTCTTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCAGTG < 2:284433/136‑1 CGCTGTTGGCCTCCAGGCCCAGCCAGGTAAGGTCGCCAGTGCGGGTCTTGTCCAGCGCGTCGACCGTTTCGCCGGGGTTCTTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACACAGTGGACCCCTGGCCACTGGGTTG < 2:2851289/150‑1 TTGGCCTCCAGGCCCAGCCAGGTAAGGTCGCCAGTGCGGGTCTTGTCCAGCGCGTCGACCGTTTCGCCGGGGTTCTTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCAGTGGACCCCTGGCCACTGGGT > 1:3005928/1‑143 TTGGCCTCCAGGCCCAGCCAGGTAAGGTCGCCAGTGCGGGTCTTGTCCAGCGCGTCGACCGTTTCGCCGGGGTTCTTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCAGTGGACCCCTGGCCACTGGGT < 2:3005928/143‑1 GACCGTTTCGCCGGGGTTCTTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCAGTGGACCCCTGGCCACTGGGTT < 2:2330486/88‑1 GACCGTTTCGCCGGGGTTCTTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCAGTGGACCCCTGGCCACTGGGTT > 1:2330486/1‑88 TTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCAGTGGACCCCTGGCCACTGGGTTG < 2:2267883/70‑1 TTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCAGTGGACCCCTGGCCACTGGGTTG > 1:2267883/1‑70 CAGTGGACCCCTGGCCACTGGGTTGGCCTGCGCGCTCACCACACACATGACAGCGGCAGCCTGAAGAACCCCGGCGAAACGGTCGACGCGCTGGACAAGACCCGCACTGGCGACCTTACCTGGCTGGGCCTGGAGGCCAACAGCGACGCC < 1:2655051/150‑1 TGGACCCCTGGCCACTGGGTTGGCCTGCGCGCTCACCACACACATGACAGCGGCAGCCTGAAGAACCCCGGCGAAACGGTCGACGCGCTGGACAAGACCCGCACTGGCGACCTTACCTGGCTGGGCCTGGAGGCCAACAGCGACGCCTAC > 1:2457761/1‑150 GACCCCTGGCCACTGGGTTGGCCTGCGCGCTCACCACACACATGACAGCGGCAGCCTGAAGAACCCCGGCGAAACGGTCGACGCGCTGGACAAGACCCGCACTGGCGACCTTACCTGGCTGGGCCTGGAGGCCAACAGCGACGCCTACAA < 1:2624451/150‑1 GTCGTTGCGCCAGTTGTAGGCGTCGCTGTTGGCCTCCAGGCCCAGCCAGGTAAGGTCGCCAGTGCGGGTCTTGTCCAGCGCGTCGACCGTTTCGCCGGGGTTCTTCAGGCTGCCGCTGTCATGTGTGTGGTGAGCGCGCAGGCCAACCCAGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1467916‑1468069‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagtggACCCCTGGCCACTGGGTTGGCCTGCGCGCTCACCACACACATGACAGCGGCAGCCTGAAGAACCCCGGCGAAACGGTCGACGCGCTGGACAAGACCCGCACTGGCGACCTTACCTGGCTGGGCCTGGAGGCCAACAGCGACGCCTACAA < NC_002947/1468077‑1467929 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |