| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 1697128 | 109 (0.950) | 8 (0.070) | 8/230 | NT | 6.8% | coding (1119/2289 nt) | PP_1492 | two‑component system sensor histidine kinase/response regulator |
| ? | NC_002947 | = 1697140 | 117 (1.080) | coding (1131/2289 nt) | PP_1492 | two‑component system sensor histidine kinase/response regulator | |||||
GTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCCGTCGACCACGGCATCGAATTGCCCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGATCCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1696973‑1697128‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcctgGTGCGAAGCCCGCAGGCGGATCACCCCCTCGTCCGGCTTGCCCGCCAGCAGGCGCCGCTCGGGCAATTCGATGCCGTGGTCGACGGCATTGCGCAACAGGTGGGTCAGCGGTGCTTCGAGCTTTTCCAGCACATCGCGGTCGACCTGG < NC_002947/1697140‑1696993 GTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCCGTCGACCACGGCATCGAATTGCCCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGATC > 2:2540287/1‑150 TGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCAGTCGGCACCGGCATCGCATTGCCGGAGCGGCGCCTGCTGGCCGGCATGCCGGGGGAGGGGGTGATCC < 2:506484/150‑1 GTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCCGTCGACCACGGCATCGAATTGCCCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGATCCGC < 1:853398/150‑1 GAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCCGTCGACCACGGCATCGAATTGCCCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGATCCGCCTG < 2:2365685/150‑1 GAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCCGTCGACCACGGCATCGAATTGCCCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGATCCGCCTG > 1:2440766/1‑150 GAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCCGTAGACCACGGCATCGAATTGCCCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGATCCGCCTG > 1:1299943/1‑150 GGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCCGTCGACCACGGCATCGAATTGCCCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGATCCGCCTGGTGC > 2:2743886/1‑150 CAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCCGTCGACCACGGCATCGAATTGCCCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGATCCGCCTGGTGCGAAGCCCGCAG < 1:2540287/150‑1 AGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCCGTCGACCACGGCATCGAATTGCCCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGATCCGCCTGGTGCGAAGCCCGCAGG < 1:2743886/150‑1 TTGCGCAATGCCGTCGACCACGGCATCGAATTGCCCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGACCCGCCTGGTGCGAAGCCCGCAGGCGGAT < 1:504003/105‑1 TTGCGCAATGCCGTCGACCACGGCATCGAATTGCCCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGACCCGCCTGGTGCGAAGCCCGCAGGCGGAT > 2:504003/1‑105 GCAATGCCGTCGACCACGGCATCGAATTGCCCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGATCCGCCTGGTGCGAAGCCCGCAGGCGGA < 2:1338132/100‑1 GCAATGCCGTCGACCACGGCATCGAATTGCCCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGATCCGCCTGGTGCGAAGCCCGCAGGCGGA > 1:1338132/1‑100 CCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGATCCGCCTGGTGCGAAGCCCGCAGGCG > 1:2767463/1‑68 CCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGATCCGCCTGGTGCGAAGCCCGCAGGCG < 2:2767463/68‑1 CCGCCTGGTGCGAAGCCCGCAGGCGGATCACCCCCTCGTCCGGCTTGCCCGCCAGCAGGCGCCGCTCGGGCAATTCGATGCCGTGGTCGACGGCATTGCGCAACAGGTGGGTCAGCGGTGCTTCGAGCTTTTCCAGCACATCGCGGTCGA > 1:813521/1‑150 CCGCCTGGTGCGAAGCCCGCAGGCGGATCACCCCCTCGTCCGGCTTGCCCGCCAGCAGGCGCCGCTCGGGCAATTCGATGCCGTGGTCGACGGCATTGCGCAACAGGTGGGTCAGCGGTGCTTCGAGCTTTTCCAGCACATCGCGGTCGA > 2:2118846/1‑150 CCGCCTGGTGCGAAGCCCGCAGGCGGATCACCCCCTCGTCCGGCTTGCCCGCCAGCAGGCGCCGCTCGGGCAATTCGATGCCGTGGTCGACGGCATTGCGCAACAGGTGGGTCAGCGGTGCTTCGAGCTTTTCCAGCACATCGCGGTCGA > 2:19979/1‑150 CCGCCTGGTGCGAAGCCCGCAGGCGGATCACCCCCTCGTCCGGCTTGCCCGCCAGCAGGCGCCGCTCGGGCAATTCGATGCCGTGGTCGACGGCATTGCGCAACAGGTGGGTCAGCGGTGCTTCGAGCTTTTCCAGCACATCGCGGTCGA > 1:1825631/1‑150 CCGCCTGGTGCGAAGCCCGCAGGCGGATCACCCCCTCGTCCGGCTTGCCCGCCAGCAGGCGCCGCTCGGGCAATTCGATGCCGTGGTCGACGGCATTGCGCAACAGGTGGGTCAG > 2:1981855/1‑115 CCGCCTGGTGCGAAGCCCGCAGGCGGATCACCCCCTCGTCCGGCTTGCCCGCCAGCAGGCGCCGCTCGGGCAATTCGATGCCGTGGTCGACGGCATTGCGCAACAGGTGGGTCAG < 1:1981855/115‑1 GCCTGGTGAGAAGCCAGCAGGCTGATCACCCCCTCGTCCGGCTTGCCCGCCAGCAGGCGCCGCTCGGGCAATTCGATGCCGTGGTCGACGGCATTGCGCAACAGGTGGGTCAGCGGTGCTTCGAGCTTTTCCAGCACATCGCGGTCGACC > 2:3051659/1‑150 TGGTGCGAAGCCCGCAGGCGGATCACCCCCTCGTCCGGCTTGCCCGCCAGCAGGCGCCGCTCGGGCAATTCGATGCCGTGGTCGACGGCAGTGCGCAACAGGTGGGTCAGCGGTGCTTCGAGCTTTTCCAGCACATCGCGGTCGACCTGG < 2:867786/150‑1 TGGTGCGAAGCCCGCAGGCGGATCACCCCCTCGTACGCCGTGCCCGCCAGCAGGCGCCGCTCGGGCAATTCGATGCCGTGGTCGACGGCATTGCGCAACAGGTGGGTCAGCGGTGCTTCGAGCTTTTCCAGCACATCGCGGTCGACCTGG < 1:160832/150‑1 GGTGCGAAGCCCGCAGGCGGATCACCCCCTCGTCCGGCTTGCCCGCCAGCAGGCGCCGCTCGGGCAATTCGATG > 2:1061912/1‑74 GGTGCGAAGCCCGCAGGCGGATCACCCCCTCGTCCGGCTTGCCCGCCAGCAGGCGCCGCTCGGGCAATTCGATG < 1:1061912/74‑1 GTGGTGGAAGGGGAGAAGACCCAGGTCGACCGCGATGTGCTGGAAAAGCTCGAAGCACCGCTGACCCACCTGTTGCGCAATGCCGTCGACCACGGCATCGAATTGCCCGAGCGGCGCCTGCTGGCGGGCAAGCCGGACGAGGGGGTGATCCGCCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/1696973‑1697128‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcctgGTGCGAAGCCCGCAGGCGGATCACCCCCTCGTCCGGCTTGCCCGCCAGCAGGCGCCGCTCGGGCAATTCGATGCCGTGGTCGACGGCATTGCGCAACAGGTGGGTCAGCGGTGCTTCGAGCTTTTCCAGCACATCGCGGTCGACCTGG < NC_002947/1697140‑1696993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |