New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1799915	76 (0.660)	11 (0.120)	8/198	NT	13.9%	intergenic (+43/‑144)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha
	?	NC_002947	= 1799957	75 (0.810)					intergenic (+85/‑102)	rnhB/dnaEA	ribonuclease HII/DNA polymerase III subunit alpha

GGCTACCCGACCCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1799744‑1799915 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccttcgcgggcacgcccgctcCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGAAGGA  <  NC_002947/1799957‑1799810                                                                                                                                                                                                                                                                                                                                  GGCTACCCGACCCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGG                                                                                                                                                                            >  1:2778845/1‑150    TACCCGACCCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCC                                                                                                                                                                         >  1:882537/1‑150      CCCGACCCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTT                                                                                                                                                                       >  2:2331845/1‑150       CCGACCCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTC                                                                                                                                                                      <  1:1126506/150‑1           CCCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGG                                                                                                                                                                  <  1:1561646/150‑1           CCCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGG                                                                                                                                                                  <  2:2823877/150‑1            CCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATTGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGG                                                                                                                                                                 <  1:2572228/150‑1            CCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCGCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGG                                                                                                                                                                 >  2:1177883/1‑150               GGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCAC                                                                                                                                                              >  1:513029/1‑150                GTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACG                                                                                                                                                             <  1:2856389/150‑1                   CATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGG                                                                                                                                                                  >  1:497501/1‑142                   CATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGG                                                                                                                                                                  <  2:497501/142‑1                    ATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGACCTTCGCGGGCACGCCCG                                                                                                                                                         >  1:1838471/1‑150                     TCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGC                                                                                                                                                                    >  2:2883576/1‑138                     TCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGC                                                                                                                                                                    <  1:2883576/138‑1                      CTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCAGCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCT                                                                                                                                                       >  2:1775246/1‑150                         GAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCG                                                                                                                                                         >  1:821933/1‑145                         GAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCG                                                                                                                                                         <  2:821933/145‑1                                             GCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCT                                                                                                                                >  1:1742244/1‑150                                                        TTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGA                                                                                                                     >  2:2285884/1‑150                                                           ATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATC                                                                                                                  <  1:2285884/150‑1                                                                       TCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGG                                                                                                      <  2:1742244/150‑1                                                                       TCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGG                                                                                                      <  2:685738/150‑1                                                                        CGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGG                                                                                                     <  1:2955465/150‑1                                                                         GCCCCGGTGCGGGCGGCTTGCGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGC                                                                                                    <  1:1775246/150‑1                                                                            CCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGC                                                                                                                                                            >  1:162463/1‑91                                                                            CCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGC                                                                                                                                                            <  2:162463/91‑1                                                                                                 GCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGG                                                                                                      >  1:1947051/1‑124                                                                                                 GCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGG                                                                                                      <  2:1947051/124‑1                                                                                                                        CCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCG                                                                                                                                                         >  1:1286294/1‑50                                                                                                                        CCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCG                                                                                                                                                         <  2:1286294/50‑1                                                                                                                               TGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGG                                                                                                      <  1:1444481/94‑1                                                                                                                               TGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGG                                                                                                      >  2:1444481/1‑94                                                                                                                                                       CCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGT                                                                >  2:2484712/1‑108                                                                                                                                                       CCCTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGT                                                                <  1:2484712/108‑1                                                                                                                                                         CTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGTCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATA                                                                   <  2:2209427/103‑1                                                                                                                                                         CTTCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATA                                                                   >  1:2209427/1‑103                                                                                                                                                           TCGCGGGCACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCCCTTCCCAAGCCGCCC                  >  2:241849/1‑150                                                                                                                                                                   ACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATA                                                                   >  1:341266/1‑93                                                                                                                                                                   ACGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATA                                                                   <  2:341266/93‑1                                                                                                                                                                    CGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGG         <  2:2459003/150‑1                                                                                                                                                                    CGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGG         <  1:2923110/150‑1                                                                                                                                                                    CGCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGG         <  2:450664/150‑1                                                                                                                                                                     GCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGC        >  1:2331845/1‑150                                                                                                                                                                     GCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTT                              >  2:1640975/1‑128                                                                                                                                                                     GCCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTT                              <  1:1640975/128‑1                                                                                                                                                                      CCCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCG       >  1:2097869/1‑150                                                                                                                                                                       CCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGA      >  1:193496/1‑150                                                                                                                                                                       CCGCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGA      >  2:458588/1‑150                                                                                                                                                                         GCTCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGAAG    >  1:1222642/1‑150                                                                                                                                                                           TCCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGAAGGA  >  1:2629259/1‑150                                                                                                                                                                                                                                                                                                                                  GGCTACCCGACCCCGGTGCATCTCGAGGCGTTGGCACGTCTTGGGCCTACGCCCATTCATCGGCGTTCCTTCGCCCCGGTGCGGGCGGCTTGGGAAGCGCGCGAAGGCGTCACCGATTCCCTGATCTGACCTATTGGGGCCGCTTCGCGGCCCTTCGCGGGCACGCCCGCTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1799744‑1799915 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcccttcgcgggcacgcccgctcCCACAGGTACGGCCCCGCCGCTCAGACCGATGAATCCTGTGAGAGCGGGCGTGCCCGCGAAGGGCCGCGAAGCGGCCCCAATAGGTCAGATCAGGGAATCGGTGACGCCTTCGCGCGCTTCCCAAGCCGCCCGCACCGGGGCGAAGGA  <  NC_002947/1799957‑1799810

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.