New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1842839 =	94 (0.820)	6 (0.060)	6/226	NT	6.7%	coding (1997/2754 nt)	gacS	sensor protein GacS
	?	NC_002947	1842873 =	80 (0.750)					coding (1963/2754 nt)	gacS	sensor protein GacS

CCGACCACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1842996‑1842839 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagcgGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTG  >  NC_002947/1842873‑1843020                                                                                                                                                                                                                                                                                                                    CCGACCACCGAGCAGGCGCTGTACCCCCCGTACCTGCCCTACGGCCATGGCCAGTTGCTGTCCAAGCCCACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAAC                                                                                                                                                              >  2:610452/1‑150 CCGACCACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAAC                                                                                                                                                              <  2:121095/150‑1      CACCGAGCAGGCGCTGTACCACCCGTACGTTCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCA                                                                                                                                                         >  1:2093434/1‑150       cCCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAG                                                                                                                                                        <  1:459278/149‑1       ACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCCACGCAACCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAG                                                                                                                                                        >  1:2335644/1‑150       ACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAG                                                                                                                                                        >  2:1554397/1‑150       ACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAG                                                                                                                                                        <  1:2717817/150‑1       ACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCGGGGCGAGGGGAGCAACCCCAACGGCCAG                                                                                                                                                        <  1:82660/150‑1                         CACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCA                                                                                                                                                         <  2:776090/131‑1                         CACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCA                                                                                                                                                         >  1:776090/1‑131                                                                                                                gatctTCGCCGTCCGCTGGCCGAGGGGAGTAACCCCAACGGCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCCGGGGCGTTGGGCAGGTACGGGTGGTA                                               <  1:415634/145‑1                                                                                                                      CGCCGTCCGCTGGCCGAGGGGAGTAACCCCAACGGCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGATGCCAGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGatc                                         >  2:415634/1‑147                                                                                                                          GTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAGC‑GACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCT                                    >  2:2469746/1‑150                                                                                                                                  GCCGAGGGGAGCAACCCCAACGGCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGG                                                                                                       <  2:1966431/76‑1                                                                                                                                  GCCGAGGGGAGCAACCCCAACGGCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGG                                                                                                       >  1:1966431/1‑76                                                                                                                                                CCCCAACGGCCAGC‑GACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTAC              <  1:2469746/150‑1                                                                                                                                                      CGGCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATT         <  2:1480429/150‑1                                                                                                                                                        GCCAGCGGACGGCGAGTTTGCACCAGCGCCAGCAAGAGGCGCCGCGGCTTGCGGGTGGAGGTCGGCGTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGG       <  2:1164542/150‑1                                                                                                                                                        GCCAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGG       >  2:2298070/1‑150                                                                                                                                                          CAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTG                                                                                        <  1:698598/67‑1                                                                                                                                                          CAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTG                                                                                        >  2:698598/1‑67                                                                                                                                                          CAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTG                                                                                        >  2:700222/1‑67                                                                                                                                                          CAGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTG                                                                                        <  1:700222/67‑1                                                                                                                                                           AGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCAC                      >  1:459189/1‑132                                                                                                                                                           AGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCAC                      <  2:459189/132‑1                                                                                                                                                           AGCGGACGGCGAGGTTGCACCAGCTCCAGCAAGAAGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGGCAGCAAATGGCCATGACCATTGGGCAGGTACGTGTGGTACAGCGCCTGCGCGGTGGTCGGACACAGAACGACCCATTGGCgg    >  2:345222/1‑148                                                                                                                                                             CGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTG  <  2:211059/150‑1                                                                                                                                                             CGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTG  <  2:2717817/150‑1                                                                                                                                                             CGGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTG  <  1:2298070/150‑1                                                                                                                                                              GGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGC                                                             >  2:2407926/1‑90                                                                                                                                                              GGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGC                                                             <  1:2407926/90‑1                                                                                                                                                              GGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGG                                                               <  2:1334772/88‑1                                                                                                                                                              GGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGG                                                               >  1:1334772/1‑88                                                                                                                                                                                                                                                                                                                    CCGACCACCGAGCAGGCGCTGTACCACCCGTACCTGCCCAACGGCCATGGCCAGTTGCTGTCCAAGCCGACCTGCACCCGCAAGCTGCGGCGCCTCTTGCTGGAGCTGGTGCAACCTCGCCGTCCGCTGGCCGAGGGGAGCAACCCCAACGGCCAGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1842996‑1842839 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggccagcgGACGGCGAGGTTGCACCAGCTCCAGCAAGAGGCGCCGCAGCTTGCGGGTGCAGGTCGGCTTGGACAGCAACTGGCCATGGCCGTTGGGCAGGTACGGGTGGTACAGCGCCTGCTCGGTGGTCGGGCACAGCACTACGCATTGGCAGTG  >  NC_002947/1842873‑1843020

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.