New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1970782	63 (0.550)	19 (0.200)	12/204	NT	26.1%	intergenic (+33/‑233)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region
	?	NC_002947	= 1970844	55 (0.570)					intergenic (+95/‑171)	mtnA/PP_mr25	methylthioribose‑1‑phosphate isomerase/gyrA regulatory region

GAGGTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1970618‑1970782 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccggcctcttcgcgggctCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCG  <  NC_002947/1970844‑1970696                                                                                                                                                                                                                                                                                                                             GAGGTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCG                                                                                                                                                                      >  1:77590/1‑150   GGTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAATGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGC                                                                                                                                                                    <  2:413074/150‑1    GTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCC                                                                                                                                                                   <  2:77590/150‑1      GTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTC                                                                                                                                                                 >  2:1365921/1‑150       TTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCT                                                                                                                                                                >  2:1391622/1‑150          AACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCG                                                                                                                                                             >  1:1016537/1‑150            CCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCG                                                                                                                                                           <  1:2072744/150‑1              CGGTGTTCGATGTAACGCCGGCCGACCTGATCGATCTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGTCTCCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGG                                                                                                                                                         <  2:1644438/150‑1                GTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCT                                                                                                                                                       >  2:2757785/1‑150                 TGTTCGCTGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTACCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTC                                                                                                                                                      <  2:123461/150‑1                     CGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCC                                                                                                                                                  >  2:958057/1‑150                         GTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCC                                                                                                                                              >  1:494404/1‑150                                        CTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCAC                                                                                                                               >  1:2348690/1‑150                                          GATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGG                                                                                                                             <  1:958057/150‑1                                          GATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGG                                                                                                                             >  1:2311770/1‑150                                                        TGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCCCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGC                                                                                                               <  2:746080/150‑1                                                                     CATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTTGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGG                                                                                                  >  1:2757651/1‑150                                                                           CGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGG                                                                                            <  2:494404/150‑1                                                                           CGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGG                                                                                            <  2:2311770/150‑1                                                                             AGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTTGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGC                                                                                                               >  1:1365969/1‑129                                                                             AGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTTGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGC                                                                                                               <  2:1365969/129‑1                                                                             AGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGC                                                                                          <  1:305507/150‑1                                                                               CGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCCTGCGATACACCAGTGGGAGCGGGCAA                                                                                        <  2:2348690/150‑1                                                                                       TGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGG                                                                                                                                                          >  1:148529/1‑76                                                                                       TGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGG                                                                                                                                                          <  2:148529/76‑1                                                                                          TGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTTGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGA                                                                             <  2:2757651/150‑1                                                                                                          CTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCG                                                                                             <  2:2808459/118‑1                                                                                                          CTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCG                                                                                             >  1:2808459/1‑118                                                                                                                        GCGCCTGCACTGATTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGC                                                                                                               <  1:1047538/87‑1                                                                                                                        GCGCCTGCACTGATTTTGTATTGCCTGCACCGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGC                                                                                                               >  2:1047538/1‑87                                                                                                                                            TCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGG                                                                                            <  1:1148878/85‑1                                                                                                                                            TCGCCT‑CACCGGCCTCTTCGCGGGCTCGCCCGCTCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGG                                                                                            >  2:1148878/1‑85                                                                                                                                                      CGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAA                                                                               <  1:660236/89‑1                                                                                                                                                      CGGCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAA                                                                               >  2:660236/1‑89                                                                                                                                                        GCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCGCAGGGGGAGCGGGCAAGCCCGGGAAGAGGCCGGTGAGGCGATACCAAATCACTGCAGGCGCTTGCGGCCAACCACCTGGGCCTGCTTG                >  1:680863/1‑150                                                                                                                                                        GCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGC                                                 >  2:556711/1‑117                                                                                                                                                        GCCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGC                                                 <  1:556711/117‑1                                                                                                                                                         CCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTG                                        <  1:2820033/125‑1                                                                                                                                                         CCTCTTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTG                                        >  2:2820033/1‑125                                                                                                                                                             TTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGC           >  2:2486834/1‑150                                                                                                                                                             TTCGCGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGC           >  2:3043520/1‑150                                                                                                                                                                 CGGGCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCC       >  1:1478495/1‑150                                                                                                                                                                    GCTCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGG    >  2:1016537/1‑150                                                                                                                                                                      TCGCCCGGCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCG  >  2:2422867/1‑150                                                                                                                                                                                                                                                                                                                             GAGGTGTTCAACCCGGTGTTCGATGTAACGCCGGCCGACCTGATCGATGTGATCGTGACCGAACGCGGCATCGTCGAGCGCCCGGATGCTGCCAAGCTGGCTCAGCTGGTTTGCCGCAAGCGCCTGCACTGATTTTGTATCGCCT‑CACCGGCCTCTTCGCGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/1970618‑1970782 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccggcctcttcgcgggctCGCCCGCCCCCACAGGTTCACCACGGCCCTAAGGCCATGCGATATCCCAGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGGTGAGGCGATACAAAATCAGTGCAGGCGCTTGCGGCAAACCAGCTGAGCCAGCTTGGCAGCATCCGGGCG  <  NC_002947/1970844‑1970696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.