New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2057843 =	86 (0.750)	9 (0.100)	9/196	NT	12.4%	intergenic (+16/+112)	PP_1832/PP_1833	oxidase/hypothetical protein
	?	NC_002947	2057931 =	58 (0.630)					intergenic (+104/+24)	PP_1832/PP_1833	oxidase/hypothetical protein

ATTGCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2058015‑2057843 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCA  >  NC_002947/2057931‑2058078                                                                                                                                                                                                                                                                                                                                   ATTGCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATG                                                                                                                                                                             <  1:1902547/150‑1   TGCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTA                                                                                                                                                                           <  2:479545/150‑1   TGCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTA                                                                                                                                                                           <  1:20889/150‑1    GCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAG                                                                                                                                                                          <  2:682300/150‑1          CATCTCGATGCTGCAGCGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGANCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGG                                                                                                                                                                    <  1:869546/150‑1          CATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGG                                                                                                                                                                    <  1:1166881/150‑1          CATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGG                                                                                                                                                                    <  2:2895012/150‑1           ATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGG                                                                                                                                                                   >  2:1309612/1‑150            TCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGT                                                                                                                                                                  <  1:1410194/150‑1            TCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGT                                                                                                                                                                  <  2:66360/150‑1              TCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTC                                                                                                                                                                <  2:717204/150‑1                 ATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACC                                                                                                                                                             >  1:2015434/1‑150                 ATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACC                                                                                                                                                             <  1:1414080/150‑1                      GCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGA                                                                                                                                                        >  1:436314/1‑150                       CAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAA                                                                                                                                                       <  1:1514415/150‑1                            CCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGT                                                                                                                                                                  <  2:783518/134‑1                            CCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGT                                                                                                                                                                  >  1:783518/1‑134                                      TTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGT                                                                                                                                                                            >  2:2328938/1‑114                                      TTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGT                                                                                                                                                                            <  1:2328938/114‑1                                                                     ATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGC                                                                                                                                                          <  2:2158173/101‑1                                                                     ATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGC                                                                                                                                                          >  1:2158173/1‑101                                                                                  GCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTGGGAGCGGGTT                                                                                                                                                                 >  2:2329093/1‑81                                                                                  GCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTGGGAGCGGGTT                                                                                                                                                                 <  1:2329093/81‑1                                                                                             GGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAG                                                                                                                                                                          <  2:2348371/61‑1                                                                                             GGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAG                                                                                                                                                                          >  1:2348371/1‑61                                                                                                GAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGG                                                                                                                   >  2:1576951/1‑113                                                                                                GAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGG                                                                                                                   <  1:1576951/113‑1                                                                                                   CCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGAT                                                                           >  2:1090984/1‑150                                                                                                    CCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCACGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGG                                                                                                          <  2:577542/118‑1                                                                                                    CCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCACGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGG                                                                                                          >  1:577542/1‑118                                                                                                     CGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGA                                                                         >  1:1800600/1‑150                                                                                                      GCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGgc                                                                        >  1:2988711/1‑148                                                                                                                                   TAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGT                                           <  2:1800600/150‑1                                                                                                                                      GCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCAC                                        <  1:1090984/150‑1                                                                                                                                                      GTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGA                                  >  2:2482482/1‑140                                                                                                                                                      GTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGA                                  <  1:2482482/140‑1                                                                                                                                                      GTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCG                                                  >  1:1306707/1‑124                                                                                                                                                      GTAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCG                                                  <  2:1306707/124‑1                                                                                                                                                       TAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATC                       <  2:2772456/150‑1                                                                                                                                                       TAGGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATC                       >  1:2545098/1‑150                                                                                                                                                         GGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGA                                                                              <  1:1231191/93‑1                                                                                                                                                         GGAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGA                                                                              >  2:1231191/1‑93                                                                                                                                                          GAGCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCC                    >  2:511962/1‑150                                                                                                                                                            GCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGA                                                                         >  1:841344/1‑95                                                                                                                                                            GCGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGA                                                                         <  2:841344/95‑1                                                                                                                                                             CGGGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAG                 <  1:2895012/150‑1                                                                                                                                                               GGTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGA               <  2:1414080/150‑1                                                                                                                                                                GTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGC                     <  2:2071908/143‑1                                                                                                                                                                GTTCACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGC                     >  1:2071908/1‑143                                                                                                                                                                    ACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGTAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCT          >  2:2506998/1‑150                                                                                                                                                                    ACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAG                                                                                                                          <  2:563187/38‑1                                                                                                                                                                    ACCCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAG                                                                                                                          >  1:563187/1‑38                                                                                                                                                                      CCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGT        >  1:9752/1‑150                                                                                                                                                                      CCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAG                                                                                                                          >  2:2925810/1‑36                                                                                                                                                                      CCGCGAAGAGGCCAGTTCAGGCAATACACCCCTCAG                                                                                                                          <  1:2925810/36‑1                                                                                                                                                                         CGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGCCGGATGGCACTGATCGCCCAGGACAGCTGTTCG     <  2:20889/150‑1                                                                                                                                                                         CGAAGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCG     <  1:717204/150‑1                                                                                                                                                                            AGAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCA  <  1:511962/150‑1                                                                                                                                                                                                                                                                                                                                   ATTGCCGGTCATCTCGATGCTGCAGAGCCAGCAGCGGTTTGCCTTGCCGACCTACCGCTGAGGGGTGTATTGCCTGAACTGGCCTCTTCGCGGGTGAACCCGCTCCTACGACCGACGGTTGCGCCGCCCTTAGGCATCGCGCAGTCAATGTAGGAGCGGGTTCACCCGCGAAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2058015‑2057843 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtaggagcgggttcacccgcgaagAGGCCAGTTCAGGCAATACACCCCTCAGCGGTAGGTCGGCAAGGCAAACCGCTGCTGGCTCTGCAGCATCGAGATGACCGGCAATTCACTGGCCTCTTCGGCCAGGTCACGACGGATGGCACTGATCGCCCAGGACAGCTGTTCGGCA  >  NC_002947/2057931‑2058078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.