| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2076413 = | 84 (0.730) | 6 (0.060) | 6/224 | NT | 6.9% | intergenic (+7/+39) | PP_5479/PP_1852 | LysR family transcriptional regulator/enoyl‑ACP reductase |
| ? | NC_002947 | 2076442 = | 84 (0.800) | intergenic (+36/+10) | PP_5479/PP_1852 | LysR family transcriptional regulator/enoyl‑ACP reductase | |||||
CATTGGGCGATATGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2076569‑2076413‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcacaggcAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGAATCAGGCT > NC_002947/2076442‑2076589 CATTGGGCGATATGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGG > 2:949347/1‑150CATTGGGCGATATGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGG < 1:949347/150‑1 ATTGGGCGATATGGCGAGCCGTAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGCATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGC > 1:50049/1‑150 ATTGGGCGATATGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGC > 1:986965/1‑150 GCGATATGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAGG > 2:1741851/1‑150 CGATATGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACATGGCAGGGCCTGAAGCCTGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAGGC < 2:1118206/150‑1 ATATGGCGAGCCGGCGGATATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCG < 1:2775127/140‑1 ATATGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCG > 2:2775127/1‑140 TGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAGGC > 1:481685/1‑145 TGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAGGC < 2:481685/145‑1 CCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCG > 2:1060987/1‑117 CCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCG < 1:1060987/117‑1 GTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCA > 1:1715127/1‑112 GTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCA < 2:1715127/112‑1 AGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAG < 1:247106/70‑1 AGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAG > 2:247106/1‑70 GATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGG > 2:2568804/1‑150 TTGCCTGTGCCGCGAAAAGGCCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTG < 1:454853/126‑1 TTGCCTGTGCCGCGAAAAGGCCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTG > 2:454853/1‑126 CCGCGAAAAGGCCGGCACAGGCAAGCGTTCAATCA < 1:575020/35‑1 CCGCGAAAAGGCCGGCACAGGCAAGCGTTCAATCA > 2:575020/1‑35 AAAAGGCCGGCACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCAT < 1:2568804/150‑1 CACAGGCAAGCGTTCAATCGGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGAATC > 2:793465/1‑150 ACAGGCAAGCGTTCCATCAGCACGCACCCCCTCCGTCTACAAGCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCGTATCGCCCAATGGCCATCAGCGGAATCA < 2:807597/150‑1 ACAGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGAATCA < 2:3008211/150‑1 ctGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGCCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGAATCAG < 1:2954150/148‑1 AGGCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGAATCAGG < 2:1297337/150‑1 GCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGAATCAGGCT > 2:1794800/1‑150 GCAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGAATCAGGCT > 1:2268714/1‑150 CATTGGGCGATATGGCGAGCCGGAGGAGATTGCCAGCTTCGTGGCTTACCTGGCAGGGCCTGAAGCCGGGTATATCACCGGGGCCAGCCTGACTGTAGATGGTGGGTTTGCAGCCTGATTGAACGCTTGCCTGTGCCGCGAAAAGGCCGGCACAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2076569‑2076413‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggcacaggcAAGCGTTCAATCAGGCTGCAAACCCACCATCTACAGTCAGGCTGGCCCCGGTGATATACCCGGCTTCAGGCCCTGCCAGGTAAGCCACGAAGCTGGCAATCTCCTCCGGCTCGCCATATCGCCCAATGGCCATCAGCGGAATCAGGCT > NC_002947/2076442‑2076589 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |