| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2085534 | 98 (0.860) | 9 (0.080) | 3/226 | NT | 9.7% | intergenic (+200/‑395) | PP_1864/PP_1865 | hypothetical protein/transposase |
| ? | NC_002947 | = 2412937 | 76 (0.720) | intergenic (+158/‑263) | rlmM/PP_2114 | 23S rRNA (cytidine(2498)‑2'‑O)‑methyltransferase RlmM/transposase | |||||
CTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2085377‑2085534‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggggcct‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAACAGCAAAAGCAGAAGCAGACGCAGACGCAGAAGCAGAACGAC < NC_002947/2412937‑2412789 CTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGA > 1:2275848/1‑150 CCGTCAAGCGCTGAGGCCCCATGGATGGGGCCTGCAGCGCGTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAACAGCAAAAG > 1:35623/1‑150 CGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCT‑‑AGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTCCGCAAGCCCTGCGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCACTTAGAAGCAAAAGCAAAAGCAacg > 1:2795049/1‑147 AAGCGCTG‑GGCCCCA‑GGATGGGGCCTGCAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTCCGCAAGCCCTGCACTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTACCGCGCACTTAGAAGCAAAAGCAAAAGCAaaggc > 1:2034044/1‑145 GCGCTG‑GGCCCCA‑GGATGGGGC‑‑‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTCCGCAAGCCCTGCGCTCGGCCTCCTGA < 2:2189758/85‑1 GCGCTG‑GGCCCCA‑GGATGGGGC‑‑‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTCCGCAAGCCCTGCGCTCGGCCTCCTGA > 1:2189758/1‑85 tgaGGCCCCATGGATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAACAGCAAAAGCAGAAGCAGACG > 1:62254/4‑150 GGCCCCATGGATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAACAGCAAAAGCAGAAGCAGACGCAG > 1:2267860/1‑150 GCCCCATGGATGGGGCCT‑CAGCGCTTGACGGGCGTCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAACAGCAAAAGCAGAAGCAGACGCAGA > 2:2963745/1‑150 GCCCCATGGATGGGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTGAGAAGCAACAGCAAAAGCATAAGCAGACGCAGA > 1:2160457/1‑150 GGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAG < 2:1839362/110‑1 GGGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAG > 1:1839362/1‑110 GGCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAACAGCAAAAGCAGAAGCAGACGCAGACGCAGAAGCAGAA < 2:195630/150‑1 GCCT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAACAGCAAAAGCAGAAGCAGACGCAGACGCAGAAGCAGAAC < 1:236787/150‑1 CT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAACAGCAAAAGCAGAAGCAGACGCAGACGCAGAAGCAGAACGA > 1:2120705/1‑150 CT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAA < 2:159977/109‑1 CT‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAA > 1:159977/1‑109 T‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCTTCGCCTGAACTATCGCGCGCTTAGAAGCAACAGCAAAAGCAGAAGCAGACGCAGACGCAGAAGCAccaagac > 1:986331/1‑143 T‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCTCGCCCCTGGAAGCAACAGCAAAAGCAGAAGCAGACGCAGACGCAGAAGCAGAACGAC > 1:676391/1‑150 T‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAACAGCAAAAGCAGAAGCAGACGCAGACGCAGAAGCAGAACGAC < 2:1408253/150‑1 T‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCCGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAACAGCAAAAGCAGAAGCAGACGCAGACGCAGAAGAAGAACGAC > 2:2323078/1‑150 CTTCTGCTTCTGCTTCTGCTCTTGCTTTGGCTTTTGCTTCTAAGCGCGCGGTAGTTCAGGCGATGCAGATTGCGACTTCAGGAGGCCGAGCGCAGGGCTTGCGGAGGGAGGTGACGGGCATGGATGCCCGTCAAGCGCTG‑GGCCCCA‑GGATGGGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2085377‑2085534‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atggggcct‑CAGCGCTTGACGGGCATCCATGCCCGTCACCTCCCTTCGCAAGCCCTACGCTCGGCCTCCTGAAGTCGCAATCTGCGTCGCCTGAACTATCGCGCGCTTAGAAGCAACAGCAAAAGCAGAAGCAGACGCAGACGCAGAAGCAGAACGAC < NC_002947/2412937‑2412789 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |