| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2242703 | 123 (1.070) | 9 (0.080) | 9/240 | NT | 6.9% | coding (233/540 nt) | PP_1978 | TetR family transcriptional regulator |
| ? | NC_002947 | = 2242735 | 121 (1.070) | coding (265/540 nt) | PP_1978 | TetR family transcriptional regulator | |||||
CAGCGTCAGTCAGGTGATGGGTGCGGCAGGCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTATGCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCGCCCAGATCGACCCCAATCTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2242554‑2242703‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaAGGCCCCGGCCAGCGCTCGCCGCCCGGCGCCATCGAGATTGGGGTCGATCTGGGCGAGCAAGGCACGGCGCTCACCCAACAACTGGCGGAACGCTTCGAGCATAAGCTCGTCCTTGCTGTCGAAGTGCGCATAGAAGCCGCCGACG < NC_002947/2242735‑2242590 CAGCGTCAGTCAGGTGATGGGTGTGGCAGGCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTATGCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCGCCCAGATCGACCCCAATCTCGA > 2:1244377/1‑150 TGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTATGCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCGCCCAGATCGACCCCAATCTCGATGGCGCCGGCCAGCGCTCGCCGCCCGGCGCCA < 2:2757864/150‑1 TTCTATGCGCACTTCGACAGCAAGGACGAGCTTATGCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCGCCCAGATCGACCCCAATCTCGATGGCCCCGGCCAGCGCTCGCCGCCCGGC > 1:1947438/1‑132 TTCTATGCGCACTTCGACAGCAAGGACGAGCTTATGCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCGCCCAGATCGACCCCAATCTCGATGGCCCCGGCCAGCGCTCGCCGCCCGGC < 2:1947438/132‑1 GCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCGCCCAGATCGACCCCAATCTCGAAGGCCCCGGCCAGCGCTCGCCGCCCGGCGCCATC > 1:390087/1‑89 GCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCGCCCAGATCGACCCCAATCTCGAAGGCCCCGGCCAGCGCTCGCCGCCCGGCGCCATC < 2:390087/89‑1 AGTTGTTGGGTGAGCGCCGTTCCTTGCTCGCCCAGATCGACCCCAATCTCGAAGGCCCCGGCCAGCGCTCGCCGCCCGGCGCCAT > 1:1804390/1‑85 AGTTGTTGGGTGAGCGCCGTTCCTTGCTCGCCCAGATCGACCCCAATCTCGAAGGCCCCGGCCAGCGCTCGCCGCCCGGCGCCAT < 2:1804390/85‑1 ACCCCAATCTCGAAGGCCCCGGCCAGCGCTCGCCGCCCGGCGCCACCGAGATTGGGGTCGATCTGGGCGAGCAAGGCACGGCGCTCACCCAACAACTGGCGGAGCGCTTCGA > 1:481100/1‑112 ACCCCAATCTCGAAGGCCCCGGCCAGCGCTCGCCGCCCGGCGCCACCGAGATTGGGGTCGATCTGGGCGAGCAAGGCACGGCGCTCACCCAACAACTGGCGGAGCGCTTCGA < 2:481100/112‑1 ATCTCGAAGGCCCCGGCCAGCGCTCGCCGCCCGGCGCCATCGAGATTGGGGTCGATCTGGGCGAGCAAGGCACGGCGCTCACCCAACAACTGGCGGAACGCTTCGAGCATAAGCTCGTCCTTGCTGTCGAAGTGCGCATAGAAGCCGCCG > 2:2686020/1‑150 GAAGGCCCCGGCCAGCGCTCGCCGCCCGGCGCCATCGAGATTGGGGTCGATCTGGGCGAGCAAGGCACGGCGCTCACCCAACAACTGGCGGAACGCTTCGAGCATAAGCTCGTCCTTGCTGTCGAAGTGCGCATAGAAGCCGCCGACG < 1:719526/148‑1 GAAGGCCCCGGCCAGCGCTCGCCGCCCGGCGCCATCGAGATTGGGGTCGATCTGGGCGAGCAAGGCACGGCGCTCACCCAACAACTGGCGGAACGCTTCGAGCATAAGCTCGTCCTTGCTGTCGAAGTGCGCATAGAAGCCGCCGACG > 2:719526/1‑148 CAGCGTCAGTCAGGTGATGGGTGCGGCAGGCCTGACCGTCGGCGGCTTCTATGCGCACTTCGACAGCAAGGACGAGCTTATGCTCGAAGCGTTCCGCCAGTTGTTGGGTGAGCGCCGTGCCTTGCTCGCCCAGATCGACCCCAATCTCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2242554‑2242703‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaAGGCCCCGGCCAGCGCTCGCCGCCCGGCGCCATCGAGATTGGGGTCGATCTGGGCGAGCAAGGCACGGCGCTCACCCAACAACTGGCGGAACGCTTCGAGCATAAGCTCGTCCTTGCTGTCGAAGTGCGCATAGAAGCCGCCGACG < NC_002947/2242735‑2242590 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |