New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2521089 =	106 (0.930)	9 (0.080)	9/228	NT	9.0%	coding (2297/4446 nt)	PP_2212	leucine‑rich repeat‑containing protein
	?	NC_002947	2521117 =	83 (0.780)					coding (2325/4446 nt)	PP_2212	leucine‑rich repeat‑containing protein

TGCTCTGATGTCAGTGCGGCAGAAAGCGCCTCGAAGATACATCCCGGCTCGTCAGCGATAAACACGTGTGGCAAACCTGACCCGTTGTAGATCAGAAACCTGCCTTCATGCCTGACCACTATTCTTCTTGCCTCGGTTCGCCCGCCGCTACCGAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2521245‑2521089 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgaggcAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGGCAGCGATGCAACTG  >  NC_002947/2521117‑2521264                                                                                                                                                                                                                                                                                                                   TGCTCTGATGTCAGTGCGGCAGAAAGCGCCTCGAAGATACATCCCGGCTCGTCAGCGATAAACACGTGTGGCAAACCTGACCCGTTGTAGATCAGAAACCTGCCTTCATGCCTGACCAATCTTCTTCTTGCCTCGGTTCGCCCGCCGCTA                                                                                                                                                             >  1:474845/1‑150  GCTCTGATGTCAGTGCGGCAGAAAGCGCCTCGAAGATACATCCCGGCTCGTCAGCGATAAACACGTGTGGCAAACCTGACCCGTTGTAGATCAGAAACCTGCCTTCATGCCTGACCACTATTCTTCTTGCCTCGGTTCGCCCGCCGCTAC                                                                                                                                                            <  2:553732/150‑1        tTGTCAGTGCGGCCGAAAGCGCCTCGAAGATGAACCCCGGCTCGTCAGCGATAAACACGTGTGGCAAACCTGGCCCGTTGTAGATCAGAAGCCTGCCCTCCTGCCTGACCACGATTCTTCCTGCCGCGGTTCGCCCGCCGCTACCGAGGC                                                                                                                                                      <  2:1500954/149‑1        ATGTCAGTGCGGCAGAAAGCGCCTCGAAGATACATCCCGGCTCGTCAGCGATAAACACGTGTGGCAAACCTGACCCGTTGTAGATCAGAAACCTGCCTTCATGCCTGACCACTATTCTTCTTGCCTCGGTTCGCCCGCCGCTACCGAGGC                                                                                                                                                      >  1:2261640/1‑150                                                    TCAGCGATAAACACGTGTGGCAAACCTGACCCGTTGTAGATCAGAAACCTGCCTTCATGCCTGACCACTATTCTTCTTGCCTCGGTTCGCCCGCCGCTACC                                                                                                                                                           <  2:240177/101‑1                                                    TCAGCGATAAACACGTGTGGCAAACCTGACCCGTTGTAGATCAGAAACCTGCCTTCATGCCTGACCACTATTCTTCTTGCCTCGGTTCGCCCGCCGCTACC                                                                                                                                                           >  1:240177/1‑101                                                                                                                             TTCTTGCCTCGGTTCGCCCGCCGCTACCGAGGCAAGAAGAATAGTGGTCAGGCATGAA                                                                                                                             <  1:1691511/58‑1                                                                                                                             TTCTTGCCTCGGTTCGCCCGCCGCTACCGAGGCAAGAAGAATAGTGGTCAGGCATGAA                                                                                                                             >  2:1691511/1‑58                                                                                                                                TTGCCTCGGTTCGCCCGCCGCTACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAAAGGAACTGGTTTGCAAAATCAACTTGGCGCTGACGATCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGAC                              >  1:361396/1‑150                                                                                                                                   CCTCGGTTCGCCCGCCGCTACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGAC                                                                       <  2:1670469/106‑1                                                                                                                                   CCTCGGTTCGCCCGCCGCTACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGAC                                                                       >  1:1670469/1‑106                                                                                                                                    CTCGGTTCGCCCGCCGCTACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGG                                                                                                      >  1:1810996/1‑74                                                                                                                                    CTCGGTTCGCCCGCCGCTACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGG                                                                                                      <  2:1810996/74‑1                                                                                                                                     TCGGTTCGCCCGCCGCTACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGC                                       <  1:2374557/136‑1                                                                                                                                     TCGGTTCGCCCGCCGCTACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGC                                       >  2:2374557/1‑136                                                                                                                                                      ACCGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTAGCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGGCAGCGATG        >  1:1977164/1‑150                                                                                                                                                        CGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGG                >  2:1567821/1‑140                                                                                                                                                        CGAGGCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGG                <  1:1567821/140‑1                                                                                                                                                            GCAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGGCAGCGATGCAACTG  >  1:1032820/1‑150                                                                                                                                                                                                                                                                                                                   TGCTCTGATGTCAGTGCGGCAGAAAGCGCCTCGAAGATACATCCCGGCTCGTCAGCGATAAACACGTGTGGCAAACCTGACCCGTTGTAGATCAGAAACCTGCCTTCATGCCTGACCACTATTCTTCTTGCCTCGGTTCGCCCGCCGCTACCGAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2521245‑2521089 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑accgaggcAAGAAGAATAGTGGTCAGGCATGAAGGCAGGTTTCTGATCTACAACGGGTCAGGTTTGCCACACGTGTTTATCGCTGACGAGCCGGGATGTATCTTCGAGGCGCTTTCTGCCGCACTGACATCAGAGCAGCGGGCAGCGATGCAACTG  >  NC_002947/2521117‑2521264

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.