New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2793739 =	38 (0.330)	4 (0.040)	4/240	NT	14.4%	intergenic (+5/+122)	PP_2445/PP_2446	membrane protein/hypothetical protein
	?	NC_002947	2793764 =	10 (0.090)					intergenic (+30/+97)	PP_2445/PP_2446	membrane protein/hypothetical protein

GCGTTGCCAGTGCCACGCGAATACCTGTGCAGCGGGCTTGTCCGCAAGAGGGGCGCGAGGCGCCCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2793808‑2793739 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttGCGGACAAGCCCGCTGCACAG  >  NC_002947/2793764‑2793784                                                                                             GCGTTGCCAGTGCCACGCGAATACCTGTGCAGCGGGCTTGTCCGCAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAA               <  1:3031310/78‑1 GCGTTGCCAGTGCCACGCGAATACCTGTGCAGCGGGCTTGTCCGCAAAAGGGGCGCCTCGCGCCCCTCTTGCGGACAA               >  2:3031310/1‑78                                               AGAGGGGCGCGAGGCGCGCCTTTTGCGGACAAGCCCGCTGCACAG  >  1:1782349/1‑45                                               AGAGGGGCGCGAGGCGCCCCTTTTGCGGACAAGCCCGCTGCACAG  <  2:1782349/45‑1                                                                                             GCGTTGCCAGTGCCACGCGAATACCTGTGCAGCGGGCTTGTCCGCAAGAGGGGCGCGAGGCGCCCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2793808‑2793739 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttGCGGACAAGCCCGCTGCACAG  >  NC_002947/2793764‑2793784

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.