| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 2844707 = | 95 (0.830) | 6 (0.060) | 6/222 | NT | 6.5% | intergenic (‑24/+56) | PP_2495/PP_2496 | hypothetical protein/hypothetical protein |
| ? | NC_002947 | 2844741 = | 87 (0.840) | intergenic (‑58/+22) | PP_2495/PP_2496 | hypothetical protein/hypothetical protein | |||||
GGCGGGCACGCAGCACCGAATACCGCCTCGACTCCGCCTGGTTCGGCCAGGGTGCCCAAATCAAGCAACGCGCCTTGGATACTGCCCTGCAATTGGTCGCCTGACCTTTTACCAATCCCACCCCATAACGCCCGACCCGCTTCGTTGCAGGTCGGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2844866‑2844707‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgggcgttATGGGGTGGGATTGGTAAAAGGTCAGGCGACCAATTGCAGGGCAGTATCCAAGGCGCGTTGCTTGATTTGGGCACCCTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTC > NC_002947/2844741‑2844885 GGCGGGCACGCAGCACCGAATACCGCCTCGACTCCGCCTGGTTCGGCCAGGGTGCCCAAATCAAGCAACGCGCCTTGGATACTGCCCTGCAATTGGTCGCCTGACCTTTTACCAATCCCACCCCATAACGCCCGACCCGCTTCGTTGCAG < 1:2426518/150‑1 GGGCACGCAGCACCGAATACCGCCTCGACTCCGCCTGGTTCGGCCAGGGTGCCCAAATCAAGCAACGCGCCTTGGATACTGCCCTGCAATTGGTCGCCTGACCTTTTACCAATCCCACCCCATAACGCCCGACCCGCTTCGTTGCAGGTC > 1:1254417/1‑150 gtCACTCAACACCGAATACCGCCTCGACTCCGCCTCGTTCGGCCAGGGTGCCCAAATCAAGCAACGCGCCTTGGATACTGCCCTGCAATTGGTCGCCTGACCTTTTCCCAATCCCACCCCATAACGCCCGACCCGCTTCGTTGCAGGTCG < 1:163751/148‑1 GCACGCAGCACCGAATACCGCCTCGACTCCGCCTGGTTCGGCCAGGGTGCCCAAATCAAGCAACGCGCCTTGGATACTGCCCTGCAATTGGTCGCCTGACCTTTTACCAATCCCACCCCATAACGCCCGACCCGCTTCGTTGCAGGTCGG < 2:838822/150‑1 GCACGCAGCACCGAATACCGCCTCGACTCCGCCTGGTTCGGCCAGGGTGCCCAAATCAAGCAACGCGCCTTGGATACTGCCCTGCAATTGGTCGCCTGACCTTTTACCAATCCCACCCCATAACGCCCGACCCGCTTCGTTGCAGGTCGG < 1:1354996/150‑1 ACGCAGCACCGAATACCGCCTCGACTCCGCCTGGTTCGGCCAGGGTGCCCAAATCAAGCAACGCGCCTTGGATACTGCCCTGCAATTGGTCGCCTGACCTTTTACCAATCCCACCCCATAACGCCCGACCCGCTTCGTTGCAGGTCGGGC < 2:535916/150‑1 ACGCAGCACCGAATACCGCCTCGACTCCGCCTGGTTCGGCCAGGGTGCCCAAATCAAGCAACGCGCCTTGGATACTGCCCTGCAATTGGTCGCCTGACCTTTTACCAATCCCACCCCATAACGCCCGACCCGCTTCGTTGCAGGTCGGGC > 1:878614/1‑150 GCAGCACCGAATACCGCCTCGACTCCGCCTGGTTCGGCCAGGGTGCCCAAATCAAGCAACGCGCCTTGGATACTGGACTGCAATTGGTCGTGTTATCTTGGACCATTCCCACCCCATAACGCCCGACCCGCTTCGTTGCAGGTCGGGCGT < 1:1148144/150‑1 AATACCGCCTCGACTCCGCCTGGTTCGGCCAGGGTGACCAAATCAAGCAACGCGCCTTGGATACTGCCCTGCAATTGGTCGCCTGACCTTTTACCAATCCCACCCCATAACGCCCGACCTGCAACGAAGCGGGTCGGGCGTTATGGGGTG < 1:2334297/150‑1 AATTGGTCGCCTGACCTTTTACCAATCCCACCCCATAACGCCCGACCCGCTTCGTTGCAG > 2:2369942/1‑60 AATTGGTCGCCTGACCTTTTACCAATCCCACCCCATAACGCCCGACCCGCTTCGTTGCAG < 1:2369942/60‑1 CCCATAACGCCCGCAACGATTCGTTGCAGGTCGTTCGTTATGGGGTTGGATTGGTAAAAGGTCAGGCGACCAATTGCAGGGCAGTATCCAAGGCGCGTTGCTTGATTTGGGCACCCTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGG < 2:2334297/150‑1 CCCATAACGCCCGACCCGCTTCGTTGCAGGTCGGGCGTTATGGGGTGGGATTGGTAAAAGGTCAGGCGACCAATTGCA < 1:2788508/78‑1 CCCATAACGCCCGACCCGCTTCGTTGCAGGTCGGGCGTTATGGGGTGGGATTGGTAAAAGGTCAGGCGACCAATTGCA > 2:2788508/1‑78 CCCGACCCGCTTCGTTGCAGGTCGGGCGTTATGGGGTGGGATTGGTAAAAGGTCAGGCGACCAATTGCAGGGCAGTATCCAAGGCGCGTTGCTTGATTTG > 2:2014498/1‑100 CCCGACCCGCTTCGTTGCAGGTCGGGCGTTATGGGGTGGGATTGGTAAAAGGTCAGGCGACCAATTGCAGGGCAGTATCCAAGGCGCGTTGCTTGATTTG < 1:2014498/100‑1 GGTCGGGCGTTATGGGGTGGGATTGGTAAAAGGTCAGGCGACCAATTGCAGGGCAGTATCCAAGGCGCGTTGCTTGATTTGGGCACCCTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGAC < 2:2411577/150‑1 TCGGGCGTTATGGGGTGGGATTGGTAAAAGGTCAGGCGACCAATTGCAGGGCAGTATCCAAGGCGCGTTGCTTGATTTGGGCACCCTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGT > 1:2543186/1‑150 GGGCGTTATGGGGTGGGATTGGTAAAAGGTCAGGCGACCAATTGCAGGGCAGTATCCAAGGCGCGTTGCTTGATTTGGGCACCCTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTAC > 2:534401/1‑150 GCGTTATGGGGTGGGATTGGTAAAAGGTCAGGCGACCAATTGCAGGGCAGTATCCAAGGCGCGTTGCTTGATTTGGGCACCCTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTC > 2:2578009/1‑150 TTATGGGGTGGGATTGGTAAAAGGTCAGGCGACCAATTGCAGGGCAGTATCCAAGGCGCGTTGCTTGATTTGGGCACCCTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGGT < 1:666125/114‑1 TTATGGGGTGGGATTGGTAAAAGGTCAGGCGACCAATTGCAGGGCAGTATCCAAGGCGCGTTGCTTGATTTGGGCACCCTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGGT > 2:666125/1‑114 GGCGGGCACGCAGCACCGAATACCGCCTCGACTCCGCCTGGTTCGGCCAGGGTGCCCAAATCAAGCAACGCGCCTTGGATACTGCCCTGCAATTGGTCGCCTGACCTTTTACCAATCCCACCCCATAACGCCCGACCCGCTTCGTTGCAGGTCGGGCGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/2844866‑2844707‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtcgggcgttATGGGGTGGGATTGGTAAAAGGTCAGGCGACCAATTGCAGGGCAGTATCCAAGGCGCGTTGCTTGATTTGGGCACCCTGGCCGAACCAGGCGGAGTCGAGGCGGTATTCGGTGCTGCGTGCCCGCCGCTCGTGATCGACGTACTC > NC_002947/2844741‑2844885 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |