| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 2975521 | 82 (0.720) | 10 (0.090) | 9/230 | NT | 11.3% | coding (496/1053 nt) | ligC | 4‑carboxy‑2‑hydroxymuconate‑6‑semialdehyde dehydrogenase |
| ? | NC_002947 | = 2975528 | 80 (0.740) | coding (503/1053 nt) | ligC | 4‑carboxy‑2‑hydroxymuconate‑6‑semialdehyde dehydrogenase | |||||
GGTGTACCGGTGCTTGTAGGGCACCATCGCCGACACAATCCGCTGATCGCCAAGGCGCACCAGGTGATCAACGAAGGCAAACTGGGCCGTCTGATCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2975368‑2975521‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctggcTCGCG‑GCGCCAGGGCGTTTCGAAATAGCTGTCGGGCTTTTGCAGTTGCCACAGCGCGGTGACATTGATCAGACGGCCCAGTTTGCCTTCGTTGATCACCTGGTGCGCCTTGGCGATCAGCGGATTGTGTCGGCGATGGTGCCCTACAA < NC_002947/2975528‑2975381 GGTGTACCGGTGCTTGTAGGGCACCATCGCCGACACAATCCGCTGATCGCCAAGGCGCACCAGGTGATCAACGAAGGCAAACTGGGCCGTCTGATCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCCC < 1:2185266/150‑1 ACACAATCCGCTGATCGCCAAGGCGCACCAGGTGATCAACGAAGGCAAACTGGGCCGTCTGATCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCC < 1:1895455/117‑1 ACACAATCCGCTGATCGCCAAGGCGCACCAGGTGATCAACGAAGGCAAACTGGGCCGTCTGATCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCC > 2:1895455/1‑117 GCCAAGGCGCACCAGGTGATCAACGAAGGCAAACTGGGCCGTCTGATCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCCCTGGCTCGCG‑GCGCCAGGGC < 1:1494819/121‑1 GCCAAGGCGCACCAGGTGATCAACGAAGGCAAACTGGGCCGTCTGATCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCCCTGGCTCGCG‑GCGCCAGGGC > 2:1494819/1‑121 AAACTGGGCCGTCTGATCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCCCTGGCTCGCG‑GCGCCAGGG > 2:2767413/1‑90 AAACTGGGCCGTCTGATCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCCCTGGCTCGCG‑GCGCCAGGG < 1:2767413/90‑1 AACTGGGCCGTCTGATCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCCCT > 1:1093190/1‑72 AACTGGGCCGTCTGATCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCCCT < 2:1093190/72‑1 TGGGCCGTCTGATCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCCCT > 2:3069321/1‑69 TGGGCCGTCTGATCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCCCT < 1:3069321/69‑1 TCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCCCTGGCTCGCG‑GCGCCAGGGC < 1:2622620/75‑1 TCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCCCTGGCTCGCG‑GCGCCAGGGC > 2:2622620/1‑75 TATTTCGAAACGCCCTGGCGC‑CGCGAGCCAGGGCGTTTCGAAATAGCTGTCGGGCTTTTGCAGTTGCCACAGCGCGGTGACATTGATCAGACGGCCCAGTTTGCCTTCGTTGATCACCTGGTGCGCCTTGGCGATCAGCGGA < 1:1324527/142‑1 TATTTCGAAACGCCCTGGCGC‑CGCGAGCCAGGGCGTTTCGAAATAGCTGTCGGGCTTTTGCAGTTGCCACAGCGCGGTGACATTGATCAGACGGCCCAGTTTGCCTTCGTTGATCACCTGGTGCGCCTTGGCGATCAGCGGA > 2:1324527/1‑142 TTTCGAAACGCCCTGGCGC‑CGCGAGCCAGGGCGTTTCGAAATAGCTGTCGGGCTTTTGCAGTTGCCACAGCGCGGTGACATTGATCA < 2:224110/87‑1 TTTCGAAACGCCCTGGCGC‑CGCGAGCCAGGGCGTTTCGAAATAGCTGTCGGGCTTTTGCAGTTGCCACAGCGCGGTGACATTGATCA > 1:224110/1‑87 CCCTGGCTCGCG‑GCGCCAGGGCGTTTCGAAATAGCTGTCGGGCTTTTGCAGTTGCCACAGCGCGGTGACATTGATCAGACGTCCCAGTTTGCCTTCGTT < 1:86339/99‑1 CCCTGGCTCGCG‑GCGCCAGGGCGTTTCGAAATAGCTGTCGGGCTTTTGCAGTTGCCACAGCGCGGTGACATTGATCAGACGTCCCAGTTTGCCTTCGTT > 2:86339/1‑99 CCCTGGCTCGCG‑GCGCCAGGGCGTTTCGAAATAGCTGTCGGGCTTTTGCAGTTGCCACAGCGCGGTGACATTGATCAGACGGCCCAGTTTGCCTTCGTTGATCACCTGGTGCGCCTTGGCGATCAGCGGATTGTGTCGGCGATGGTGCCC < 2:2365936/150‑1 TGGCTCGCG‑GCGCCAGGGCGTTTCGAAATAGCTGTCGGGCTTTTGCAGTTGCCACAGCGCGGTGACATTGATCAGACGGCCCAGTTTGCCTTCGTTGATCACCTGGTGCGCCTTGGCGATCAGCGGATTGTGTCGGCGATGGTGCCCTAC < 2:2978849/150‑1 TGGCTCGCG‑GCGCCAGGGCGTTTCGAAATAGCTGTCGGGCTTTTGCAGTTGCCACAGCGCGGTGACATTGATCAGACGGCCCAGTTTGCCTTCGT < 2:1926837/95‑1 TGGCTCGCG‑GCGCCAGGGCGTTTCGAAATAGCTGTCGGGCTTTTGCAGTTGCCACAGCGCGGTGACATTGATCAGACGGCCCAGTTTGCCTTCGT > 1:1926837/1‑95 GCTCGCG‑GCGCCAGGGCGTTTCGAAATAGCTGTCGGGCTTTTGCAGTTGCCACAGCGCGGTGACATTGATCAGACGGCCCAGTTTGCCTTCGTTGATCACCTGGTGCGCCTTGGCGATCAGCGGATTGTGTCGGCGATGGTGCCCTACAA < 2:2008727/150‑1 GGTGTACCGGTGCTTGTAGGGCACCATCGCCGACACAATCCGCTGATCGCCAAGGCGCACCAGGTGATCAACGAAGGCAAACTGGGCCGTCTGATCAATGTCACCGCGCTGTGGCAACTGCAAAAGCCCGACAGCTATTTCGAAACGCCCTGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/2975368‑2975521‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctggcTCGCG‑GCGCCAGGGCGTTTCGAAATAGCTGTCGGGCTTTTGCAGTTGCCACAGCGCGGTGACATTGATCAGACGGCCCAGTTTGCCTTCGTTGATCACCTGGTGCGCCTTGGCGATCAGCGGATTGTGTCGGCGATGGTGCCCTACAA < NC_002947/2975528‑2975381 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |