New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	2987433 =	NA (NA)	4 (0.040)	4/230	NT	NA	coding (1009/2991 nt)	PP_2612	membrane protein
	?	NC_002947	2987492 =	NA (NA)					coding (950/2991 nt)	PP_2612	membrane protein

CCGGCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCGCAACCTGGTCGCCATGTTGCTGAACAAGACGCTGGAAAGCCTGTACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCACGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2987587‑2987433 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGTGCTC  >  NC_002947/2987492‑2987640                                                                                                                                                                                                                                                                                                                  CCGGCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCGCAACCTGGTCGCCATGTTGCTGAACAAGACGCTGGAAAGCCTGTACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCACG                                                                                                                                                            >  1:2076835/1‑150    GCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCGCAACCTGGTCGCCATGTTGCTGAACAAGACGCTGGAAAGCCTGTACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCACGCCG                                                                                                                                                         >  2:1947586/1‑150    GCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCGCAACCTGGTCGCCATGTTGCTGAACAAGACGCTGGAAAGCCTGTACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCACGCCG                                                                                                                                                         >  1:444646/1‑150     CTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCGCAACCTGGTCGCCATGTTGCTGAACAAGACGCTGGAAAGCCTGTACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCACGCCGG                                                                                                                                                        >  1:2953114/1‑150     CTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCAAACACTGCTCGCCATGTTGCTGAACAAGACGCTGGAAAGCCTGTACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCACGCCGG                                                                                                                                                        <  2:81931/150‑1      TGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCGCAACCTGGTCGCCATGTTGCTGAACAAGACGCTGGAAAGCCTGTACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCACGCCGGG                                                                                                                                                       <  2:447786/150‑1      TGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCGCAACCTGGTCGCCATGTTGCTGAACAAGACGCTGGAAAGCCTGTACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCACGCCGGG                                                                                                                                                       <  2:2929951/150‑1                           CGCAGAGCCGCGACTTTCACCATCGCAACCTGGTCGCCATGTTGCTGAACAAGACGCTGGAAAGCCTGTACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCAC                                                                                                                                                             >  1:1136969/1‑123                           CGCAGAGCCGCGACTTTCACCATCGCAACCTGGTCGCCATGTTGCTGAACAAGACGCTGGAAAGCCTGTACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCAC                                                                                                                                                             <  2:1136969/123‑1                                                                                  GCTGGAAAGCCTGTACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCACGCCGGGTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGA                                                                           >  2:2007353/1‑150                                                                                  GCTGGAAAGCCTGTACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCAC                                                                                                                                                             >  1:2612178/1‑68                                                                                  GCTGGAAAGCCTGTACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCAC                                                                                                                                                             <  2:2612178/68‑1                                                                                              GTACCGGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCACGCCGGGTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCAT                                                               >  2:2422843/1‑150                                                                                                ACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCACGCCGGGTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCC                                                             <  1:2007353/150‑1                                                                                                     GCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCACGCCGGGTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCG                                                        >  2:1289550/1‑150                                                                                                                                                     CGCCGGGTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGT        <  1:1021000/150‑1                                                                                                                                                     CGCCGGGTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGT        <  2:678061/150‑1                                                                                                                                                     CGCCGGGTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGT        <  2:1465749/150‑1                                                                                                                                                     CGCCGGGTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGT        <  1:2484736/150‑1                                                                                                                                                      gcaGGGTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGGGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATACCACCCGTAGCAGGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTG       <  1:2090288/147‑1                                                                                                                                                       CCGGGTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGT      <  2:2119208/150‑1                                                                                                                                                        CGGGTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCCGCGCCGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGTG     <  1:1751187/150‑1                                                                                                                                                         GGGTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGTGC    <  1:2573045/150‑1                                                                                                                                                         GGGTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCATGCTCGGGAGGTTGGGCAGGTTTTGTGTGC    <  1:322808/150‑1                                                                                                                                                           GTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGTGAGGTTGGGCAGGTTTTGTGTGCTC  <  1:1120278/150‑1                                                                                                                                                           GTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGTGCTC  <  1:336505/150‑1                                                                                                                                                                                                                                                                                                                  CCGGCTGGATGCCGAACAGCTCAGCCCGCAGAGCCGCGACTTTCACCATCGCAACCTGGTCGCCATGTTGCTGAACAAGACGCTGGAAAGCCTGTACCCGGCGGATGCCCCTTCGCCGGAACTGGCCGCGTTCAGGCTGGGCACGTCACGCCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/2987587‑2987433 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgccgggTACAGGCTTTCCAGCGTCTTGTTCAGCAACATGGCGACCAGGTTGCGATGGTGAAAGTCGCGGCTCTGCGGGCTGAGCTGTTCGGCATCCAGCCGGTAGCATGCCGGCACGCGCTCCTGCTCGGGAGGTTGGGCAGGTTTTGTGTGCTC  >  NC_002947/2987492‑2987640

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.