New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3068857 =	81 (0.710)	5 (0.050)	5/228	NT	5.8%	intergenic (+65/‑98)	qedH‑II/aldB‑II	quinoprotein ethanol dehydrogenase/aldehyde dehydrogenase
	?	NC_002947	3068898 =	88 (0.820)					intergenic (+106/‑57)	qedH‑II/aldB‑II	quinoprotein ethanol dehydrogenase/aldehyde dehydrogenase

CCATAACGGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3069013‑3068857 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggggctTCTTACCATCGGTGCATCGCCTGTCGTGGGACAGGCACCGACCCGCAGAGGCTCAGCATGATCTACGCACAACCCGGAACTCCAGGCGCCGTCGTATCCTTCAAACCCCGTTATGGCAACTTCATCGGTGGCGAGTTCGTGCAGCCGTT  >  NC_002947/3068898‑3069046                                                                                                                                                                                                                                                                                                                    CCATAACGGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAG                                                                                                                                                              <  2:171706/150‑1  CATAACGGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGC                                                                                                                                                             >  2:886161/1‑150  CATAACGGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCAGCGGTAAGAAGCCGCGCGTGCCGGGCGAATGCATCGTTGGCAGC                                                                                                                                                             >  2:672180/1‑150    gAACGGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCTTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGG                                                                                                                                                           <  2:1368921/149‑1    TAACGGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGG                                                                                                                                                           <  1:672180/150‑1     AACGGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGG                                                                                                                                                          <  1:1965661/150‑1     AACGGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGG                                                                                                                                                          <  2:720940/150‑1     AACGGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGG                                                                                                                                                          <  1:944419/150‑1     AACGGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCAGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGCTGTACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGG                                                                                                                                                          >  1:2490672/1‑150      ACGGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGGG                                                                                                                                                         <  2:2881097/150‑1        GGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGGGtt                                                                                                                                                       >  1:1132240/1‑148        GGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGGGCT                                                                                                                                                       >  2:716199/1‑150        GGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGGGCT                                                                                                                                                       >  2:2625844/1‑150                                CTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGGGCT                                                                                                                                                       >  1:1549256/1‑126                                CTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGGGCT                                                                                                                                                       <  2:1549256/126‑1                                                                                                                      GCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGGGCTTCTTACCATCGGTGCATCGCCTGTCGTGGGACAGGCACCGACCCGCAGAGGCTCAGCATGATCTACGCACAACCCGGAACTCCAGGCGCCGTCGTATCCTTCAAACCCCG                                         >  2:832003/1‑150                                                                                                                       CCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGGGCTTCTTACCATCGGTGCATCGCCTGTCGTGGGACAGGCACCGACCCGCAGAGGCTCAGCATGATCTACGCACAACCCGGAACTCCAGGCGCCGTCGTATCCTTCAAACCCCGT                                        >  2:196842/1‑150                                                                                                                        CCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGGGCTTCTTACCATCGGTGCATCGCCTGTCGTTGGACAGGCA                                                                                                                  >  2:287484/1‑75                                                                                                                        CCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGGGCTTCTTACCATCGGTGCATCGCCTGTCGTTGGACAGGCA                                                                                                                  <  1:287484/75‑1                                                                                                                                     CGAATGCATCGTTGGCAGCGGGGCTTCTTACCATCGGTGCATCGCCTGTCGTGGGACAGGCACCGACCCGCAGAGGCTCAGCATGATCTACGCACAACCCGGAACTCCAGGCGCCGTCGTATCCTTCAAACCCCGTTATGGCAACTTCAT                          <  1:196842/150‑1                                                                                                                                                        GGGGCTTCTTACCATCGGTGCATCGCCTGTCGTGGGACAGGCACCGACCCGCAGAGGCTCAGCATGATCTACGCACAACCCGGAACTCCAGGCGCCGTCGTATCCTTCAAACCCCGTTAT                                     >  1:899151/1‑120                                                                                                                                                        GGGGCTTCTTACCATCGGTGCATCGCCTGTCGTGGGACAGGCACCGACCCGCAGAGGCTCAGCATGATCTACGCACAACCCGGAACTCCAGGCGCCGTCGTATCCTTCAAACCCCGTTAT                                     <  2:899151/120‑1                                                                                                                                                         GGGCTTCTTACCATCGGTGCATCGCCTGTCGTGGGACAGGCACCGACCCGCAGAGGCTCAGCATGATCTACGCACAACCCGGAACTCCAGGCGCCGTCGTATCCTTCAAACCCCGTTATGGCAACTTCATCGGTGGCGAGTTCGTGCAGC      <  1:2121800/150‑1                                                                                                                                                             TTCTTACCATCGGTGCATCGCCTGTCGTGGGACAGGCACCGACCCGCAGAGGCTCAGCATGATCTACGCACAACCCGGAACTCCAGGCGCCGTCGTATCCTTCAAACCCCGTTATGGCAACTTCATCGGTGGCGAGTTCGTGCAGCCGTT  >  1:597403/1‑150                                                                                                                                                             TTCTTACCATCGGTGCATCGCCTGTCGTGGGACAGGCACCGACCCGCAGAGGCTCAGCATGATCTACGCACAACCCGGAACTCCAGGCGCCGTCGTATCCTTCAAACCCCGTTATGGCAACTTCATCGGTGGCGAGTTCGTGCAGCCGTT  >  2:737104/1‑150                                                                                                                                                                                                                                                                                                                    CCATAACGGGGTTTGAAGGATACGACGGCGCCTGGAGTTCCGGGTTGTGCGTAGATCATGCTGAGCCTCTGCGGGTCGGTGCCTGTCCCACGACAGGCGATGCACCGATGGTAAGAAGCCCCGCGTGCCGGGCGAATGCATCGTTGGCAGCGGGGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3069013‑3068857 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcggggctTCTTACCATCGGTGCATCGCCTGTCGTGGGACAGGCACCGACCCGCAGAGGCTCAGCATGATCTACGCACAACCCGGAACTCCAGGCGCCGTCGTATCCTTCAAACCCCGTTATGGCAACTTCATCGGTGGCGAGTTCGTGCAGCCGTT  >  NC_002947/3068898‑3069046

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.