New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3322429 =	90 (0.790)	6 (0.050)	6/234	NT	6.3%	coding (386/972 nt)	PP_2922	urea amidolyase‑like protein
	?	NC_002947	3322457 =	92 (0.840)					coding (414/972 nt)	PP_2922	urea amidolyase‑like protein

CGCAACACCACCTCCCCCCCCAGGGCCTGACGCAGGGCCATGGGCAAGCTTGCACCGGCACGGGTCTTGCCGCTGGGCACGCCGACCGGCAGCAGGTCGCCCGCCATCAGTTTGCGCCCATGAAAGCCACCCAACGCGCCCAGCGCG‑TA‑GGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3322582‑3322429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggCTTTCATGGGCGCAAACTGATGGCGGGCGACCTGCTGCCGGTCGGCGTGCCCAGCGGCAAGACCCGTGCCGGTGCAAGCTTGCCCATGGCCCTGCGTCAGGCCCTGGGGGGGGAGGTGGTGTTGCGGGTGGTGCCTGGGCTGTACTTCC  >  NC_002947/3322457‑3322605                                                                                                                                                                                                                                                                                                                   CGCAACACCACCTCCCCCCCCAGGACCTGACGCAGGGCCATGGGCAAGCTTGCACCGGCACGGGTCTTGCCGCTGGGCACGCCGACCGGCAGCAGGTCGCCCGCCATCAGTTTGCGCCCATGAAAGCCACCCAACGCGCCCAGCGCG‑TA‑G                                                                                                                                                           >  2:1699311/1‑150  GCAACACCACCTCCCCCCCCAGGGCCTGACGCAGGGCCATGGGCAAGCTTGCACCGGCACGGGTCTTGCCGCTGGGCACGCCGACCGGCAGCAGGTCGCCCGCCATCAGTTTGCGCCCATGAAAGCCACCCAACGCGCCCAGCGCG‑TA‑GG                                                                                                                                                          >  1:1004179/1‑150   CAACACCACCTCCCCCCCCAGGGCCTGACGCAGGGCCATGGGCAAGCTTGCACCGGCACGGGTCTTGCCGCTGGGCACGCCGACCGGCAGCAGGTCGCCCGCCATCAGTTTGCGCCCATGAAAGCCACCCAACGCGCCCAGCGCG‑TA‑GGT                                                                                                                                                         <  2:681942/150‑1     ACACCACCGCCCCCCCCAGGGCCTGACGCAGGGCCCTGGGCAAGAATGCACGTGCACGGTTCTTGCCGCTGGGAAAGCCGACCGGCAGCAGGTCGCCCGCCATCAGTTTGCGCCCATGAAAGCCACCCAACGCGCCCAGCGCG‑TA‑GGTGG                                                                                                                                                       <  1:2217547/150‑1              CCCCCCCCAGGGCCTGACGCAGGGCCATGGGCAAGCTTGCACCGGCACGGGTCTTGCCGCTGGGCACGCCGACCGGCAGCAGGTCGCCCGCCATCAGTTTGCGCCCATGAAAGCCA‑CCTACGCGCTGGGCGCGTTG‑GGTGGCTTTCATGG                                                                                                                                              <  2:2794353/150‑1                                     GCCATGGGCAAGCTTGCACCGGCACGGGTCTTGCCGCTGGGCACGCCGACCGGCAGCAGGTCGCCCGCCATCAGTTTGCGCCCATGAAAGCCACCCAACGCGCCCAGCGCG‑TA‑GGT                                                                                                                                                         >  2:2993501/1‑116                                     GCCATGGGCAAGCTTGCACCGGCACGGGTCTTGCCGCTGGGCACGCCGACCGGCAGCAGGTCGCCCGCCATCAGTTTGCGCCCATGAAAGCCACCCAACGCGCCCAGCGCG‑TA‑GGT                                                                                                                                                         <  1:2993501/116‑1                                      CCATGGGCAAGCTTGCACCGGCACGGGTCTTGCCGCTGGGCACGCCGACCGGCAGCAGGTCGCCCGCCATCAGTTTGCGCCCATGAAAGCCACCCAACGCGCCCAGCGCG‑TA‑GGT                                                                                                                                                         <  1:1955894/115‑1                                      CCATGGGCAAGCTTGCACCGGCACGGGTCTTGCCGCTGGGCACGCCGACCGGCAGCAGGTCGCCCGCCATCAGTTTGCGCCCATGAAAGCCACCCAACGCGCCCAGCGCG‑TA‑GGT                                                                                                                                                         >  2:1955894/1‑115                                                                                              AGGTCGCCCGCCATCAGTTTGCGCCCATGAAAGCCACCCAACGCGCCCAGCGCG‑TA‑G                                                                                                                                                           <  1:1245382/57‑1                                                                                              AGGTCGCCCGCCATCAGTTTGCGCCCATGAAAGCCACCCAACGCGCCCAGCGCG‑TA‑G                                                                                                                                                           >  2:1245382/1‑57                                                                                                                        ATGAAAGCCACCCAACGCGCCCAGCGCG‑TA‑GGTGGCTTTCATGGGCGCAAACTGATGGCGGGCGACCTGCTGCCGGTCGGCGTGCCCAGCGGCAAGACCCGTGCCGGTGCAAGCTTGCCCATGGCCCTGCGTCAGGCCCTGGGG                                          >  2:1586608/1‑144                                                                                                                        ATGAAAGCCACCCAACGCGCCCAGCGCG‑TA‑GGTGGCTTTCATGGGCGCAAACTGATGGCGGGCGACCTGCTGCCGGTCGGCGTGCCCAGCGGCAAGACCCGTGCCGGTGCAAGCTTGCCCATGGCCCTGCGTCAGGCCCTGGGG                                          <  1:1586608/144‑1                                                                                                                               CCACCCAACGCGCCCAGCGCG‑TAGGGTGGCTTTCATGGGCGCAAACTGATGGCGGGCGACCTGCTGCCGGTCGGCGTGCCCAGCGGCAAGACCCGTGCCGGTGCAA                                                                          >  2:2326164/1‑106                                                                                                                               CCACCCAACGCGCCCAGCGCG‑TAGGGTGGCTTTCATGGGCGCAAACTGATGGCGGGCGACCTGCTGCCGGTCGGCGTGCCCAGCGGCAAGACCCGTGCCGGTGCAA                                                                          <  1:2326164/106‑1                                                                                                                                              AGCGCG‑TA‑GGTGGCTTTCATGGGCGCAAACTGATGGCGGGCGACCTGCTGCCGGTCGGCGTGCCCAGCGGCAAGACCCGTGCCGGTGCAAGCTTGCCCATGGCCCTGCGTCAGGCCCTGGGGGGGGAGGTGGTGTTGCGGGTGGTGCCTG              <  1:2794353/150‑1                                                                                                                                                          TGGCTTTCATGGGCGCAAACTGATGGCGGGCGACCTGCTGCCGGTCGGCGTGCCCAGCGGCAAGACCCGTGCCGGTGCAAGCTTGCCCATGGCCCTGCGTCAGGCCCTGGGGGGGGAGGTGGTGTTGCGGGTGGTGCCTGGGCTGTACTT    >  2:2119986/1‑150                                                                                                                                                          TGGCTTTCATGGGCGCAAACTGATGGCGGGCGACCTGCTGCCGGTCGGCGTGCCCAGCGGCAAGACCCGTGCCGGTGCAAGCTTGCCCATGGCCCTGCGTCAGGCCCTGGGGGGGGAGGGGGGGTTGCGGGTGGTGCCTGGGCTGTACTT    >  2:2502283/1‑150                                                                                                                                                           GGCTTTCATGGGCGCAAACTGATGGCGGGCGACCTGCTGCCGGTCGGCGTGCCCAGCGGCAAGACCCGTGCCGGTGCAAGCTTGCCCATGGCCCTGCGTCAGGCCCTGGGGGGGGAGGTGGTGTTGCGGGTGGTGCCTGGGCTGTACTTC   <  2:2403113/150‑1                                                                                                                                                            GCTTTCATGGGCGCAAACTGATGGCGGGCGACCTGCTGCCGGTCGGCGTGCCCAGCGGCAAGACCCGTGCCGGTGCAAGCTTGCCCATGGCCCTGCGTCAGGCCCTGGGGGGGGAGGTGGTGTTGCGGGTGGTGCCTGGGCTGTACTTCC  >  1:1093589/1‑150                                                                                                                                                                                                                                                                                                                   CGCAACACCACCTCCCCCCCCAGGGCCTGACGCAGGGCCATGGGCAAGCTTGCACCGGCACGGGTCTTGCCGCTGGGCACGCCGACCGGCAGCAGGTCGCCCGCCATCAGTTTGCGCCCATGAAAGCCACCCAACGCGCCCAGCGCG‑TA‑GGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3322582‑3322429 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtggCTTTCATGGGCGCAAACTGATGGCGGGCGACCTGCTGCCGGTCGGCGTGCCCAGCGGCAAGACCCGTGCCGGTGCAAGCTTGCCCATGGCCCTGCGTCAGGCCCTGGGGGGGGAGGTGGTGTTGCGGGTGGTGCCTGGGCTGTACTTCC  >  NC_002947/3322457‑3322605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.