New junction evidence | |||||||||||
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seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | = 3340972 | 89 (0.780) | 5 (0.050) | 5/230 | NT | 5.2% | coding (351/420 nt) | PP_2937 | integrase |
? | NC_002947 | = 3340986 | 97 (0.900) | coding (337/420 nt) | PP_2937 | integrase |
TCGAACAGCGGCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3340818‑3340972 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctccTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGACTGACGACAGGGCCTAAATACACCTCTGGAACCCCCGCAGGACAAGCACTTGATTTCTACCGCTAACATCACCATGCAGTTC < NC_002947/3340986‑3340838 tccAACAGCGGCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCCTGTCATGCGGGGGTTCTAGATGTGTATTTAGGCCCTGTCGTCAGTCTTCGGCCTATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCA < 1:604699/147‑1 GAACAGCGGCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGC > 2:630950/1‑150 AACAGCGGCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCT < 1:2670687/150‑1 GCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGAGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCA < 2:1557666/125‑1 GCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGAGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCA > 1:1557666/1‑125 TGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCTCCTCGGACTGGAGGGAGCTGGAGAA < 2:2111085/150‑1 GAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCTCCTCGGACTTGAGGGAGCTGGAGAAGCTGC < 1:560151/141‑1 GAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCCTCCTCGGACTTGAGGGAGCTGGAGAAGCTGC > 2:560151/1‑141 GCGGCAGCTTCTCCAGCTCCTCCTCGGACTGGAGGGAGCTGGA < 1:450277/43‑1 GCGGCAGCTTCTCCAGCTCCTCCTCGGACTGGAGGGAGCTGGA > 2:450277/1‑43 AGCTCCTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGACTGACGACAGGGCCTAAATACACCTCTGGAACCCCCGCAGGACAAGCACTTGATTTCTACCGCTAACATCACCATGC > 1:260860/1‑150 GCTCCTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGA > 1:2438193/1‑72 GCTCCTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGA < 2:2438193/72‑1 CCTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGACTGACGACAGGGCCTAAATACACCTCTGGAACCCCCGCAGGACAAGCACTTGATTTCTACCGCTAACATCACCATGCAGTT > 1:2645690/1‑150 CTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGACTGACGACAGGGCCTAAATACACCTCTGGAACCCCCGCAGGACAAGCACTTGATTTCTACCGCTAACATCACCATGCAGTcc > 2:2829974/1‑148 CTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGACTGACGACAGGGCCTAAATACACCTCTGGAACCCCCGCA < 1:377238/107‑1 CTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGACTGACGACAGGGCCTAAATACACCTCTGGAACCCCCGCA > 2:377238/1‑107 TCGAACAGCGGCTTGGAGCCGAACTGCATGGTGATGTTAGCGGTAGAAATCAAGTGCTTGTCCTGCGGGGGTTCCAGAGGTGTATTTAGGCCCTGTCGTCAGTCTTGGGCCAATTTTGGGCCAATTCGACTCGGGGCGGCAGCTTCTCCAGCTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_002947/3340818‑3340972 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cagctccTCCTCGGACTGGAGGGAGCTGGAGAAGCTGCCGCCCCGAGTCGAATTGGCCCAAAATTGGCCCAAGACTGACGACAGGGCCTAAATACACCTCTGGAACCCCCGCAGGACAAGCACTTGATTTCTACCGCTAACATCACCATGCAGTTC < NC_002947/3340986‑3340838 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |