| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 3524178 = | NA (NA) | 4 (0.040) | 4/234 | NT | NA | coding (848/1533 nt) | PP_3114 | transposase |
| ? | NC_002947 | 3524214 = | NA (NA) | coding (884/1533 nt) | PP_3114 | transposase | |||||
GCTTCGACGAACTTGCGGCGCGCGTGCGCCCAGCAGCCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3524331‑3524178‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGCTGGCTGCACAGGACGGGCTGGAGCGATTGG‑GCTGCTGGGCGCACGCGCGCCGCAAGTTCGTCGAAGCGCAGAAAGTACAGCCCAAGGGCAAAACAGGA > NC_002947/3524214‑3524362 GCTTCGACGAACTTGCGGCGCGCGTGCGCCCAGCAGCCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGG < 1:1789055/150‑1GCTTCGACGAACTTGCGGCGCGCGTGCGCCCAGCAGCCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGG > 1:2736564/1‑150 TTCGACGAACTTGCGGCGCGCGTGCGCCCAGCAGCCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATTGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCT > 2:276683/1‑150 TTCGACGAACTTGCGGCGCGCGTGCGCCCAGCAGCCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCT > 2:1179061/1‑150 TTCGACGAACTTGCGGCGCGCGTGCGCCCAGCAGCCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCT > 1:498456/1‑150 TCGACGAACTTGCGGCGCGCGTGCGCCCAGCAGCCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTG < 1:125548/150‑1 AGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCCCTCGGC > 1:979555/1‑89 AGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCCCTCGGC < 2:979555/89‑1 GACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGGACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGC < 1:1969214/107‑1 GACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGGACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGC > 2:1969214/1‑107 CCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGGACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGCTGGCTGCACAGGACGGGCTGGAGCGATTGG‑GCTGCTGGGC > 1:2849900/1‑140 CCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGGACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGCTGGCTGCACAGGACGGGCTGGAGCGATTGG‑GCTGCTGGGC < 2:2849900/140‑1 GCTGGACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGCTGGCTGCACAGGACGGGCTGGGGTGAGAGGTGCT‑CGGGGCGCACGCGCGCCGAAAGTTAGTCGAAGTGCATATAGTAAAGCCCAAGGGCAAAAC > 1:834712/1‑150 GCTGGACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGCTGGCTGCACAGGACGGGCTGGAGCGATTGG‑GCTGCTGGGCGCACGCGCGCCGCAAGTTCGTCGAAGCGCAGAAAGTACAGCCCAAGGGCAAAAC < 2:1201529/150‑1 GCTGGACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGCTGGCTGCACAGGACGGGCTGGAGCGATTGG‑GCTGCTGGGCGCACGCGCGCCGCAAGTTCGTCGAAGCGCAGAAAGTACAGCCCAAGGGCAAAAC < 2:1669607/150‑1 CTGGACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGCTGGCTGCACAGGACGGGCTGGAGCGATTGG‑GCTGCTGGGCGCACGCGCGCCGCAAGTTCGTCGAAGCGCAGAAAGTACAGCCCAAGGGCAAAACA < 2:10127/150‑1 TGGACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGCTGGCTGCACAGGACGGGCTGGAGCGATTGG‑GCTGCTGGGCGCACGCGCGCCGCAAGTTCGTCGATTAGCGGAAAGTACAGCCCAAGGGCAAAACAG < 1:858900/150‑1 TGGACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGCTGGCTGCACAGGACGGGCTGGAGCGATTGG‑GCTGCTGGGCGCACGCGCGCCGCAAGTTCGTCGAAGCGCAGAAAGTACAGCCCAAGGGCAAAACAG < 1:1813497/150‑1 TGGACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGCTGGCTGCACAGGACGGGCTGGAGCGATTGG‑GCTGCTGGGCGCACGCGCGCCGCAAGTTCGTCGAAGCGCAGAAAGTACAGCCCAAGGGCAAAACAG > 2:2943302/1‑150 GGACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGCTGGCTGCACAGGACGGGCTGGAGCGATTGG‑GCTGCTGGGCGCACGCGCGCCGCAAGTTCGTCGAAGCGCAGAAAGTACAGCCCAAGGGCAAAACAGG > 2:135805/1‑150 GACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGCTGGCTGCACAGGACGGGCTGGAGCGATTGG‑GCTGCTGGGCGCACGCGCGCCGCAAGTTCGTCGAAGCGCAGAAAGTACAGCCCAAGGGCAAAACAGGA < 1:1758193/150‑1 GCTTCGACGAACTTGCGGCGCGCGTGCGCCCAGCAGCCCAATCGCTCCAGCCCGTCCTGTGCAGCCAGCGCGTTGTAACCGGCGTAGTCGTCGGTCATGACATAGCCGCGATAGCCGTCCAGCAGGCGCACCGGCACCTCCTGCGCTCGGCTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/3524331‑3524178‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gctggACGGCTATCGCGGCTATGTCATGACCGACGACTACGCCGGTTACAACGCGCTGGCTGCACAGGACGGGCTGGAGCGATTGG‑GCTGCTGGGCGCACGCGCGCCGCAAGTTCGTCGAAGCGCAGAAAGTACAGCCCAAGGGCAAAACAGGA > NC_002947/3524214‑3524362 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |