New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 3542087	129 (1.130)	7 (0.060)	6/230	NT	5.4%	coding (679/966 nt)	galE	UDP‑glucose 4‑epimerase
	?	NC_002947	= 3542107	123 (1.140)					coding (659/966 nt)	galE	UDP‑glucose 4‑epimerase

GGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3541935‑3542087 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcatgTGGCAGACCTGGCGGCTGCCCATGCACTGGCAGTGGATTATCTACTGGACGGTGGCGAGCGTGCCGCGTTCAACCTGGGCAATGGCCTGGGCTTTTCGGTGCAGCAGGTGATCGATACGGCCCGGGCCGTGACCGGGCGACAGATCACT  <  NC_002947/3542107‑3541959                                                                                                                                                                                                                                                                                                                GGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGC                                                                                                                                                          <  1:2621870/150‑1   CGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGTCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCAT                                                                                                                                                        <  2:1878284/150‑1    GCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATG                                                                                                                                                       >  2:1193173/1‑150                GTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCA                                                                                                                                                         <  2:826379/136‑1                GTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCA                                                                                                                                                         >  1:826379/1‑136                             ATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGTGGCAGACCTGGCGGCTGCCCAgg                                                                                                                               <  2:2662281/149‑3                             ATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGTGGCAGACCTGGCGGCTGCCCATG                                                                                                                               >  1:2662281/1‑149                                 GTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGTGGCAGACCTGGCGGCTGCCCATGCACTG                                                                                                                          <  1:108395/150‑1                                                                              AAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGTGGCAGACCTGGCGGCTGCCCATGCAC                                                                                                                            <  1:1964712/103‑1                                                                              AAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGTGGCAGACCTGGCGGCTGCCCATGCAC                                                                                                                            >  2:1964712/1‑103                                                                                                  AGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGTGGCAGACCTGGCGGCTGCCCAT                                                                                                                                <  1:2327270/79‑1                                                                                                  AGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATGTGGCAGACCTGGCGGCTGCCCAT                                                                                                                                >  2:2327270/1‑79                                                                                                                                                  cgtcCATGGGGCAGACCTGGCGGCTGCACACGCACTGGCAGTGGATTATCTACTGGACGGTGGCGAGCGTGCCGCGTTCAACCTGGGCAATGGCCTGGGCTTTTCGGGGCAGCAGGTGATCGATACGGCCCGGGCCGTGACCGGGCGACA         <  1:349661/146‑1                                                                                                                                                       ATGTGGCAGACCTGGCGGCTGCCCATGCACTGGCAGTGGATTATCTACTGGACGGTGGCGAGCGTGCCGCGTTCAACCTGGGCAATGGCCTGGGCTTTTCGGTGCAGCAGGTGATCGATACGGCCCGGGCCGTGACCGGGCGACAGATCA    >  1:854195/1‑150                                                                                                                                                        TGTGGCAGACCTGGCGGCTGCCCATGCACTGGCAGTGGATTATCTACTGGACGGTGGCGAGCGTGCCGCGTTCAACCTGGGCAATGGCCTGGGCTTTTCGGTGCAGCAGGTGATCGATACGGCCCGGGCCGTGACCGGGCGACAGATCAC   >  2:2504698/1‑150                                                                                                                                                         GTGGCAGACCTGGCGGCTGCCCATGCACTGGCAGTGGATTATCTACTGGACGGTGGCGAGCGTGCCGCGTTCAACCTGGGCAATGGCCTGGGCTTTTCGGTGCAGCAGGTGATCGATACGGCCCGGGCCGTGACCGGGCGACAGATCACT  >  2:1556964/1‑150                                                                                                                                                         GTGGCAGACCTGGCGGCTGCCCATGCACTGGCAGTGGATTATCTACTGGACGGTGGCGAGCGTGCCGCGTTCAACCTGGGCAATGGCCTGGGCTTTTCGGTGCAGCAGGTGATCGATACGGCCCGGGCCGTGACCGGGCGACAGATCACT  <  1:1212788/150‑1                                                                                                                                                                                                                                                                                                                GGCGCGGCGCTGTGCGTCAAGGGCAGTGATCTGTCGCCCGGTCACGGCCCGGGCCGTATCGATCACCTGCTGCACCGAAAAGCCCAGGCCATTGCCCAGGTTGAACGCGGCACGCTCGCCACCGTCCAGTAGATAATCCACTGCCAGTGCATG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/3541935‑3542087 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtgcatgTGGCAGACCTGGCGGCTGCCCATGCACTGGCAGTGGATTATCTACTGGACGGTGGCGAGCGTGCCGCGTTCAACCTGGGCAATGGCCTGGGCTTTTCGGTGCAGCAGGTGATCGATACGGCCCGGGCCGTGACCGGGCGACAGATCACT  <  NC_002947/3542107‑3541959

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.