New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3569122 =	94 (0.820)	5 (0.050)	5/230	NT	5.3%	coding (1636/1998 nt)	PP_3150	hypothetical protein
	?	NC_002947	3569158 =	89 (0.820)					coding (1672/1998 nt)	PP_3150	hypothetical protein

CAGCTTCGGCGCCTTGTCCCAGCGGTAACGGCTCTTGGCTTTGGCAAAGTGCTCCGGCGTGTAGCCTTTGCGCAGCATGTTGGCCACGGCGACGAACGCTTTGTCATCGCCCTTGTCCTGTTCCAGCGCCTGCCAGCTGGCATAGCGGAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3569274‑3569122 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaacagGACAAGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGCGCAAAGGCTACACGCCGGAGCACTTTGCCAAAGCCAAGAGCCGTTACCGCTGGGACAAGGCGCCGAAGCTGTTCCTGGGGCGAGTACGGGATGTGAAGAACAT  >  NC_002947/3569158‑3569306                                                                                                                                                                                                                                                                                                                CAGCTTCGGCGCCTTGTCCCAGCGGTAACGGCTCTTGGCTTTGGCAAAGTGCTCCGGCGTGTAGCCTTTGCGCAGCATGTTGGCCACGGCGACGAACGCTTTGTCATCGCCCTTGTCCTGTTCCAGCGCCTGCCAGCTGGCATAGCGGAA                                                                                                                                                          <  2:1853770/150‑1  AGCTTCGGCGCCTTGTCCCAGCGGTAACGGCTCTTGGCTTTGGCAAAGTGCTCCGGCGTGTAGCCTTTGCGCAGCATGTTGGCCACGGCGACGAACGCTTTGTCATCGCCCTTGTCCTGTTCCAGCGCCTGCCAGCTGGCATAGCGGAAC                                                                                                                                                         <  1:1009000/150‑1   GCTTCGGCGCCTTGTCCCAGCGGTAACGGCTCTTGGCTTTGGCAAAGTGCTCCGGCGTGTAGCCTTTGCGCAGCATGTTGGCCACGGCGACGAACGCTTTGTCATCGCCCTTGTCCTGTTCCAGCGCCTGCCAGCTGGCATAGCGGAACA                                                                                                                                                        <  1:1180012/150‑1   GCTTCGGCGCCTTGTCCCAGCGGTAACGGCTCTTGGCTTTGGCAAAGTGCTCCGGCGTGTAGCCTTTGCGCAGCATGTTGGCCACGGCGACGAACGCTTTGTCATCGCCCTTGTCCTGTTCCAGCGCCTGCCAGCTGGCATAGCGGAACA                                                                                                                                                        <  2:2872721/150‑1                                                                                                  GCTTTGTCATCGCCCTTGTCCTGTTCCAGCGCCTGCCAGCTGGCATAGCGGAAC                                                                                                                                                         >  2:2894690/1‑54                                                                                                  GCTTTGTCATCGCCCTTGTCCTGTTCCAGCGCCTGCCAGCTGGCATAGCGGAAC                                                                                                                                                         <  1:2894690/54‑1                                                                                                                     CCTGTTCCAGCGCCTGCCAGCTGGCATAGCGGAACAGGACAAGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGCGCAAAGGCTACACGCCGGAGCACTTTGCCAAAGCCAAGAGCCGTTAGCGCTGGGACAAGGCGCCGAA                                      >  1:158227/1‑150                                                                                                                      CTGTTCCAGCGCCTGCCAGCTGGCATAGCGGAACAGGACAAGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGCGCAAAGGCTACACGCCGGAGCACTTTGCCAAAGCCAAGAGCCGTTACCGCT                                                      >  1:910066/1‑133                                                                                                                      CTGTTCCAGCGCCTGCCAGCTGGCATAGCGGAACAGGACAAGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGCGCAAAGGCTACACGCCGGAGCACTTTGCCAAAGCCAAGAGCCGTTACCGCT                                                      <  2:910066/133‑1                                                                                                                                        GCTGGCATAGCGGAACAGGACAGGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGC                                                                                                         <  1:2661307/64‑1                                                                                                                                        GCTGGCATAGCGAAACAGGACAAGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGC                                                                                                         >  2:2661307/1‑64                                                                                                                                                   GGAACAGGACAAGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGCGCAAAGGCTACACGCCGGAGCACTTTGCCAAGGCCAAGAGCCGTTACCGCTGGGACAAGGCGCCGAAGCTGTTCCTGGGGCGAGTACGGGATGTGAA        <  1:1341427/150‑1                                                                                                                                                   GGAACAGGACAAGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGCGCAAAGGCTACACGCCGGAGCACTTTGCCAAAGCCAAGAGCCGTTACCGCTGGGACAAGGCGCCGAAGCTGTTCCTGGGGCGAGTACGGGATGTGAA        <  1:2522130/150‑1                                                                                                                                                   GGAACAGGACAAGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGCGCAAAGGCTACACGCCGGAGCACTTTGCCAAAGCCAAGAGCCGTTACCGCTGGGACAAGGCGCCGAAGCTGTTCCTGGGGCGAGTACGGGATGTGAA        <  2:838199/150‑1                                                                                                                                                     AACAGGACAAGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGCGCAAAGGCTACACGCCGGAGCACTTTGCCAAAGCCAAGAGCCGTTACCGCTGGGACAAGGCGCCGAAGCTGTTCCTGGGGCGAGTACGGGATGTGAAGA      <  2:1716430/150‑1                                                                                                                                                      ACAGGACAAGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGCGCAAAGGCTACACGCCGGAGCACTTTGCCAAAGCCAAGAGCCGTTACCGCTGGGACAAGGCGCCGAAGCTGTTCCTGGGGCGAGTACGGGATGTGAAGAA     >  1:1169912/1‑150                                                                                                                                                       CAGGACAAGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGCGCAAAGGCTACACGCCGGAGCACTTTGCCAAAGCCAAGAGCCGTTACCGCTGGGACAAGGCGCCGAAGCTGTTCCTGGGGCGAGTACGGGATGTGAAGAAC    >  1:2285971/1‑150                                                                                                                                                        AGGACAAGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGCGCAAAGGCTACACGCCGGAGCACTTTGCCAAAGCCAAGAGCCGTTACCGCTGGGACAAGGCGCCGAAGCTGTTCCTGGGGCGAGTACGGGATGTGAAGAACA   <  2:1009000/150‑1                                                                                                                                                        AGGACAAGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGCGCAAAGGCTACACGCCGGAGCACTTTGCCAAAGCCAAGAGCCGTTACCGCTGGGACAAGGCGCCGAAGCTGTTCCTGGGGAGAGAACGGACTGTGAccaaga   >  2:2951503/1‑144                                                                                                                                                         GGACAAGGGCGATCACAAAGCGTTCGTCGCCGTGGCCAACATGCTGCGCAAAGGCTACACGCCGGAGCACTTTGCCAAAGCCAAGAGCCGTTACCGCTGGGACAAGGCGCCGAAGCTGTTCCTGGGGCGAGTACGGGATGTGAAGAACAT  <  1:2034346/150‑1                                                                                                                                                                                                                                                                                                                CAGCTTCGGCGCCTTGTCCCAGCGGTAACGGCTCTTGGCTTTGGCAAAGTGCTCCGGCGTGTAGCCTTTGCGCAGCATGTTGGCCACGGCGACGAACGCTTTGTCATCGCCCTTGTCCTGTTCCAGCGCCTGCCAGCTGGCATAGCGGAACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3569274‑3569122 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggaacagGACAAGGGCGATGACAAAGCGTTCGTCGCCGTGGCCAACATGCTGCGCAAAGGCTACACGCCGGAGCACTTTGCCAAAGCCAAGAGCCGTTACCGCTGGGACAAGGCGCCGAAGCTGTTCCTGGGGCGAGTACGGGATGTGAAGAACAT  >  NC_002947/3569158‑3569306

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.