New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002947 = 407948162 (0.540)4 (0.040) 4/196 NT 6.6% intergenic (‑241/+143) sdaC/amaC serine:H+ symport permease/D‑lysine aminotransferase
?NC_002947 = 4079550 63 (0.690)intergenic (‑310/+74) sdaC/amaC serine:H+ symport permease/D‑lysine aminotransferase

AACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4079310‑4079481
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggccttgcgtcgcgaAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAGGCCGCCCCACAGGCGCCCAGGCCGCTACATTCCACCGATCGACACCAGCAATGC  <  NC_002947/4079550‑4079403
                                                                                                                                                                                                                                                                                                                                
AACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTG                                                                                                                                                                            >  1:798458/1‑150
 ACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGT                                                                                                                                                                           <  1:1539858/150‑1
 ACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGT                                                                                                                                                                           <  1:2765336/150‑1
     GAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGCATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGA                                                                                                                                                                       <  2:1778637/150‑1
     GAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGA                                                                                                                                                                       <  1:515965/150‑1
     GAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGA                                                                                                                                                                       <  2:798458/150‑1
        AAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCG                                                                                                                                                                    >  2:1445642/1‑150
               GCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGC                                                                                                                                                             <  1:428697/150‑1
                    ATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTATCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGC                                                                                                                                                        <  2:148981/150‑1
                             GGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGT                                                                                                                                               >  1:1976433/1‑150
                                        ACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTC                                                                                                                                                          <  2:45824/128‑1
                                        ACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTC                                                                                                                                                          >  1:45824/1‑128
                                                                    TTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGG                                                                                                                                                                   >  1:2109669/1‑91
                                                                    TTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGG                                                                                                                                                                   <  2:2109669/91‑1
                                                                                                      GTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAA                                                                      <  2:1976433/150‑1
                                                                                                                   GAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGC                                                                                                                                                             <  2:2072571/50‑1
                                                                                                                   GAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGC                                                                                                                                                             >  1:2072571/1‑50
                                                                                                                          GCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGAC                                                                          <  1:2750713/126‑1
                                                                                                                          GCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGAC                                                                          >  2:2750713/1‑126
                                                                                                                                                    TGTGGGAGCGGCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAGGCCGCCCCACAGGCGCCCAGGCCGCTACATTC                        <  1:478941/150‑1
                                                                                                                                                              GCCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAGGCCGCCCCACAGGCGCCCAGGCCGCTACATTCCACCGATCGA              >  1:1445642/1‑150
                                                                                                                                                               CCTTGCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAGGCCGCCCCACAGGCGCCCAGGCCGCTACATTCCACCGATCGAC             >  2:263558/1‑150
                                                                                                                                                                   GCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCTGCTGA                                                                                                            <  1:588245/51‑1
                                                                                                                                                                   GCGTCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCTGCTGA                                                                                                            >  2:588245/1‑51
                                                                                                                                                                      TCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAGGCCGCCCCACAGGCGCCCAGGCCGCTACATTCCACCGATCGACACCAGCA      >  1:274372/1‑150
                                                                                                                                                                      TCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAGGCCGCCCCACAGGCGCCCAGGCCGCTACATTCCACCGATCGACACCAGCA      >  2:2493120/1‑150
                                                                                                                                                                      TCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAGGCCGCCCCACAGGCG                                         <  2:972120/115‑1
                                                                                                                                                                      TCGCGAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAGGCCGCCCCACAGGCG                                         >  1:972120/1‑115
                                                                                                                                                                          GAAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAGGCCGCCCCACAGGCGCCCAGGCCGCTACATTCCACCGATCGACACCAGCAATGC  <  2:1459838/150‑1
                                                                                                                                                                                                                                                                                                                                
AACCGGAAAAGAGGGGCGCGATTGTGCACGGAAAGGTTGCACTTGCGAAGCCCTTTTCCGAGGAGCGGTTGCACTTGTCTTTACAAGCGGAAGGCATTGCTGGTGTCGATCGGTGGAATGTAGCGGCCTGGGCGCCTGTGGGGCGGCCTGTGGGAGCGGCCTTGCGTCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4079310‑4079481
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtgggagcggccttgcgtcgcgaAAAGGGTGCGGAGCGCCCCTACGATTGCAGCTTTGCCGCTGAAATTGCTGGGGCCGCTTTGCGGCCCTATCGCGACGCAAGGCCGCTCCCACAGGCCGCCCCACAGGCGCCCAGGCCGCTACATTCCACCGATCGACACCAGCAATGC  <  NC_002947/4079550‑4079403

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.