New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4094682 =	85 (0.740)	8 (0.080)	7/220	NT	9.1%	intergenic (+54/+81)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator
	?	NC_002947	4094751 =	84 (0.810)					intergenic (+123/+12)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator

TGGCCATGCGCATGCACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4094842‑4094682 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccagtacagGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCGGGCAATCGCCTCATAGATCGCCTCGTGCTCAT  >  NC_002947/4094751‑4094899                                                                                                                                                                                                                                                                                                                        TGGCCATGCGCATGCACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAA                                                                                                                                                                  <  1:3071265/150‑1    CCATGCGCATGCACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCGTGTCGAAGCGGGCTTGCCCGCGAAAAGGC                                                                                                                                                               >  1:1445038/1‑150    CCATGCGCATGCACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGC                                                                                                                                                               <  1:16675/150‑1    CCATGCGCATGCACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGC                                                                                                                                                               <  2:1385964/150‑1      ATGCGCATGCACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCA                                                                                                                                                             <  2:2538424/150‑1      ATGCGCATGCACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCA                                                                                                                                                             <  2:2747349/150‑1         CGCATGCACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTA                                                                                                                                                          <  2:1738415/150‑1         CGCATGCACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTA                                                                                                                                                          <  1:2444614/150‑1          GCATGCACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTAC                                                                                                                                                         >  1:1691183/1‑150            ATGCACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAG                                                                                                                                                       >  1:1096932/1‑150            ATGCACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGCAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAG                                                                                                                                                       <  2:108525/150‑1                ACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAA                                                                                                                                                                  <  1:1873879/135‑1                ACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAA                                                                                                                                                                  >  2:1873879/1‑135                                     GCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAG                                                                                                                                                       >  1:234420/1‑125                                     GCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAG                                                                                                                                                       <  2:234420/125‑1                                          CGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGC                                                                                                                                                               >  2:371426/1‑112                                          CGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGC                                                                                                                                                               <  1:371426/112‑1                                                  GCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGTGCTTGCCCGCGAAAAGGC                                                                                                                                                               <  2:275463/104‑1                                                  GCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGC                                                                                                                                                               >  1:275463/1‑104                                                                            CCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAA                                                                                                                                                                  >  1:1226067/1‑75                                                                            CCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCAGCGAAAA                                                                                                                                                                  <  2:1226067/75‑1                                                                                                TACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCTAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGC                                                                                             >  2:2435956/1‑124                                                                                                TACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCTAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGC                                                                                             <  1:2435956/124‑1                                                                                                   TGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCT                                                                                                        <  1:82451/110‑1                                                                                                   TGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCCCATGCGCCT                                                                                                        >  2:82451/1‑110                                                                                                   TGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCAT                                                                >  1:979398/1‑150                                                                                                    GGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATG                                                               <  2:979398/150‑1                                                                                                       CTCTTCACGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCA                                                                                                                        <  1:964543/90‑1                                                                                                       CTCTTCACGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCA                                                                                                                        >  2:964543/1‑90                                                                                                                                                      AGGCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCGGGCAATCGCCTCATAGATCGC             <  1:2538424/150‑1                                                                                                                                                        GCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAG                                                                            <  1:2759297/85‑1                                                                                                                                                        GCCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAG                                                                            >  2:2759297/1‑85                                                                                                                                                         CCAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCACCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCGGGCAATCGCCTCATAGATCGCCTC          >  1:2917310/1‑150                                                                                                                                                          CAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCGGGCAATCGCCTCATAGATCGCCTCG         >  1:815907/1‑150                                                                                                                                                          CAGTACAGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCGGGCAATCGCCTCATAGATCGCCTCG         >  1:2962243/1‑150                                                                                                                                                                AGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCGGGCAATCGCCTCATAGATCGCCTCGTGCTCA   <  2:1567652/150‑1                                                                                                                                                                AGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCGGGCAATCGCCTCATAGATCGCCTCGTGCTCA   <  2:2364439/150‑1                                                                                                                                                                AGGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCGGGCAATCGCCTCATAGATCGCCTCGTGCTCA   <  1:1385964/150‑1                                                                                                                                                                 GGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCGGGCAATCGCCTCATAGATCGCCTCGTGCTCAT  >  1:587308/1‑150                                                                                                                                                                                                                                                                                                                        TGGCCATGCGCATGCACCTGAGCAACAGCCGCGAGCGCTTGCGCCAGGCGCATGAGGCGGCTGAAGCGCAAGGAACCTGAAGCCTTTGCTGCCTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4094842‑4094682 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aggccagtacagGCAGCAAAGGCTTCAGGTTCCTTGCGCTTCAGCCGCCTCATGCGCCTGGCGCAAGCGCTCGCGGCTGTTGCTCAGGTGCATGCGCATGGCCATCTTCGCCCCTTCGCTGTCACGCCGGGCAATCGCCTCATAGATCGCCTCGTGCTCAT  >  NC_002947/4094751‑4094899

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.