New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4094693	86 (0.750)	5 (0.050)	4/220	NT	5.8%	intergenic (+65/+70)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator
	?	NC_002947	= 4094738	84 (0.810)					intergenic (+110/+25)	PP_3602/PP_3603	2,5‑dioxovalerate dehydrogenase/GntR family transcriptional regulator

GCAGACGCTGCTGCCTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4094538‑4094693 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtactggcctCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGTTCACCAACCG  <  NC_002947/4094738‑4094590                                                                                                                                                                                                                                                                                                                   GCAGACGCTGCTGCCTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTAC                                                                                                                                                             <  2:1802207/150‑1  CAGACGCTGCTGCCTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACT                                                                                                                                                            >  1:1363894/1‑150  CAGACGCTGCTGCCTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGGTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACT                                                                                                                                                            >  2:272798/1‑150   AGACGCTGCTGCCTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTG                                                                                                                                                           <  2:2766521/150‑1                                                     CGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTTTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAA                                                                                                         <  1:2000954/150‑1                                                           GTGAACGGTCAGTGGATTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAG                                                                                                        <  2:2341828/145‑1                                                           GTGAACGGTCAGTGGATTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAG                                                                                                        >  1:2341828/1‑145                                                                       TGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAA                                                                                                         <  1:1916254/132‑1                                                                       TGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAA                                                                                                         >  2:1916254/1‑132                                                                                                   CCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTG                                                                                                                                                                >  1:191007/1‑49                                                                                                   CCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTG                                                                                                                                                                <  2:191007/49‑1                                                                                                                                                 CTGTACTGGCCTCTTCGCGGGCAAGATAGGCCTGTCGAAGCGGGCTTGCCAGGGAAAAGGCCAGTACAGTAAAAAAAGAAAAGGCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGACACCAGTCAGATCGCCCGGTCAATCCAaaaaacg             >  1:1165659/1‑143                                                                                                                                                 CTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCC                              >  1:2164607/1‑133                                                                                                                                                 CTGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCC                              <  2:2164607/133‑1                                                                                                                                                  TGTACTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGT            >  2:1909033/1‑150                                                                                                                                                      CTGGCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGTTCAC        <  1:2927826/150‑1                                                                                                                                                         GCCTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGTTCACCAA     <  1:1767365/150‑1                                                                                                                                                           CTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGTTCACCAACC   >  1:963455/1‑150                                                                                                                                                           CTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGTTCACCAACC   >  1:765292/1‑150                                                                                                                                                           CTCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGTTCACCAACC   >  2:2066673/1‑150                                                                                                                                                            TCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGTTCACCAACCG  >  2:1363894/1‑150                                                                                                                                                            TCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGTTCACCAACCG  >  1:1020171/1‑150                                                                                                                                                            TCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAG                                                                                >  2:1677433/1‑72                                                                                                                                                            TCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAG                                                                                <  1:1677433/72‑1                                                                                                                                                                                                                                                                                                                   GCAGACGCTGCTGCCTGAGGCACTGCGCGACGGCAACCCGCTGGGGCTGCGGCGGTTGGTGAACGGTCAGTGGAGTGACGGGGCGATCTGACTGGTTGCCAGAAACAGGAAAGCCCTGCGCACGGCGGGGCTTTTCTTTTTTGACTGTACTGGCCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4094538‑4094693 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgtactggcctCTTCGCGGGCAAGATAGCCCTGTCGAAGCGGGCTTGCCCGCGAAAAGGCCAGTACAGTCAAAAAAGAAAAGCCCCGCCGTGCGCAGGGCTTTCCTGTTTCTGGCAACCAGTCAGATCGCCCCGTCACTCCACTGACCGTTCACCAACCG  <  NC_002947/4094738‑4094590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.