New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	4282145 =	136 (1.190)	6 (0.060)	6/220	NT	5.1%	intergenic (‑678/+40)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator
	?	NC_002947	4282184 =	99 (0.960)					intergenic (‑717/+1)	PP_3751/PP_3753	cyanate transporter/AraC family transcriptional regulator

GAGCCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4282302‑4282145 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGCCCGGTGG  >  NC_002947/4282184‑4282332                                                                                                                                                                                                                                                                                                                     GAGCCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTA                                                                                                                                                               <  2:740802/150‑1   GCCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGG                                                                                                                                                             >  2:1682667/1‑150    CCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGA                                                                                                                                                            >  2:100484/1‑150    CCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGGTCTACCTGTAGGAGCTGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGA                                                                                                                                                            >  1:66803/1‑150     CCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCGCATGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAG                                                                                                                                                           >  1:2489985/1‑150        GGGAGCTACCGGGCGCGGCTGGTCGGTCTTAGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGG                                                                                                                                                        <  2:2688711/150‑1         GGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGG                                                                                                                                                       <  1:2671175/150‑1                                      CGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGG                                                                                                                                                       >  1:2043874/1‑121                                      CGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGG                                                                                                                                                       <  2:2043874/121‑1                                                GTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGT                                                                                                                                                                <  1:144522/102‑1                                                GTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGT                                                                                                                                                                >  2:144522/1‑102                                                                                                                   GTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGCTTGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTA                                             >  2:2987601/1‑150                                                                                                                        CCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTC                                                                                   >  2:1769843/1‑107                                                                                                                        CCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTC                                                                                   <  1:1769843/107‑1                                                                                                                           GCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTG                                                                                                           >  2:158572/1‑80                                                                                                                           GCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTG                                                                                                           <  1:158572/80‑1                                                                                                                               CTACAGGGCACGCCCAGAATTGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCT                                 >  2:1187819/1‑150                                                                                                                                                  cttTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCC                                                                                       >  1:2745878/4‑77                                                                                                                                                   TGTAGGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGA             <  1:1250693/150‑1                                                                                                                                                       GGAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGC         >  2:2328529/1‑150                                                                                                                                                        GAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGCC        >  2:2175069/1‑150                                                                                                                                                        GAGCGGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGCC        >  1:2726508/1‑150                                                                                                                                                           CGGGCTTGCCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGCCCGG     <  1:2987601/150‑1                                                                                                                                                            GGGTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGCCCGGT    <  1:400978/150‑1                                                                                                                                                              GTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGCCCGGTGG  >  1:1091332/1‑150                                                                                                                                                              GTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGC                                                        <  2:2461908/96‑1                                                                                                                                                              GTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGC                                                        >  1:2461908/1‑96                                                                                                                                                                                                                                                                                                                     GAGCCCAGGGAGCTACCGGGCGCGGCTGGTCGGCCTGCGTTCTACCTGTAGGAGCGGGCATGCCCGCGAAGAAACCACCGCGGTGGATGGCACCGGCTCTGCCGGTGTTCGCGGGTAAACCCGCTCCTACAGGGCACGCCCAGAATTGTAGGAGCGGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/4282302‑4282145 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgtaggagcgggTTTACCCGCGAACACCGGCAGAGCCGGTGCCATCCACCGCGGTGGTTTCTTCGCGGGCATGCCCGCTCCTACAGGTAGAACGCAGGCCGACCAGCCGCGCCCGGTAGCTCCCTGGGCTCTGCCCGGTCCACTTCTTGAACGCCCGGTGG  >  NC_002947/4282184‑4282332

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.