New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4455221	99 (0.860)	6 (0.050)	6/244	NT	5.1%	coding (1808/2178 nt)	PP_3950	methyl‑accepting chemotaxis transducer
	?	NC_002947	= 4455254	124 (1.080)					coding (1775/2178 nt)	PP_3950	methyl‑accepting chemotaxis transducer

TCGACGTCCTGCACGCCCTGCTCCATGAAGCTTACCGCCTGCCGGGTTTCGCCCTGCAGGCTCTCGACCATGTGGCGAATGTCGTCGGCGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4455128‑4455221 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGAGGTGCGCAGCCTGGCCGCACGCACCTCGCGTGCC  <  NC_002947/4455254‑4455217                                                                                                                                      TCGACGTCCTGCACGCCCTGCTCCATGAAGCTTACCGCCTGCCGGGTTTCGCCCTGCAGGCTCTCGACCATGTGGCGAATGTCGTCGGCGGCACACGAGGTGCGCAGCCTGGCCGCACGCACCTCGCGTGCC  <  1:325142/132‑1 TCGACGTCCTGCACGCCCTGCTCCATGAAGCTTACCGCCTGCCGGGTTTCGCCCTGCAGGCTCTCGACCATGTGGCGAATGTCGTCGGCGGCACACGAGGTGCGCAGCCTGGCCGCACGCACCTCGCGTGCC  >  2:325142/1‑132                    GCTCCATGAAGCTTACCGCCTGCCGGGTTTCGCCCTGCAGGCTCTCGACCATGTGGCGAATGTCGTCGGCGGCACGCGAGGTGCGCAGCCTGGCCGCACGCACCT          <  1:469381/105‑1                    GCTCCATGAAGCTTACCGCCTGCCGGGTTTCGCCCTGCAGGCTCTCGACCATGTGGCGAATGTCGTCGGCGGCACGCGAGGTGCGCAGCCTGGCCGCACGCACCT          >  2:469381/1‑105                                      CCTGCCGGGTTTCGCCCTGCAGGCTCTCGACCATGTGGCGAATGTCGTCGGCGGCACACGAGGTGCGCAGCCTGGCCGCACGCACCTCGCGT     >  1:1077819/1‑92                                      CCTGCCGGGTTTCGCCCTGCAGGCTCTCGACCATGTGGCGAATGTCGTCGGCGGCACACGAGGTGCGCAGCCTGGCCGCACGCACCTCGCGT     <  2:1077819/92‑1                                                                                                                                      TCGACGTCCTGCACGCCCTGCTCCATGAAGCTTACCGCCTGCCGGGTTTCGCCCTGCAGGCTCTCGACCATGTGGCGAATGTCGTCGGCGGCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002947/4455128‑4455221 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ACGAGGTGCGCAGCCTGGCCGCACGCACCTCGCGTGCC  <  NC_002947/4455254‑4455217

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.