| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 4860907 = | 122 (1.070) | 7 (0.060) | 6/230 | NT | 6.1% | coding (188/2331 nt) | ligA | DNA ligase |
| ? | NC_002947 | 4860926 = | 102 (0.950) | coding (169/2331 nt) | ligA | DNA ligase | |||||
TGCCGAGCTCGATCAGCACAATTATCGCTACTACGTGCTCGACGAGCCCAGCGTGCCTGATGCCGAATACGACCGCCTGTTCAACGAGCTCAAGGCGCTGGAAGCTGAACACCCGCACCTGGTAACCCCCGACTCGCCCACCCAGCGTGTGGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4861062‑4860907‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggtggGCGAGTCGGGGGTTACCAGGTGCGGGTGTTCAGCTTCCAGCGCCTTGAGCTCGTTGAACAGGCGGTCGTATTCGGCATCAGGCACGCTGGGCTCGTCGAGCACGTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGA > NC_002947/4860926‑4861072 TGCCGAGCTCGATCAGCACAATTATCGCTACTACGTGCTCGACGAGCCCAGCGTGCCTGATGCCGAATACGACCGCCTGTTCAACGAGCTCAAGGCGCTGGAAGCTGAACACCCGCACCTGGTAACCCCCGACTCGCCCACCCAGCGTGT < 2:1159199/150‑1 CCGAGCTCGATCAGCACAATTATCGCTACTACGTGCTCGACGAGCCCAGCGTGCCTGATGCCGAATACGACCGCCTGTTCAACGAGCTCAAGGCGCTGGAAGCTGAACACCCGCACCTGGTAACCCCCGACTCGCCCACCCAGCGTGTGG < 2:2220741/150‑1 CGAGCTCGATCAGCACAATTATCGCTACTACGTGCTCGACGAGCCCAGCGTGCCTGATGCCGAATACGACCGCCTGTTCAACGAGCTCAAGGCGCTGGAAGCTGAACACCCGCACCTGGTAACCCCCGACTCGCCCACCCAGCGTGTGGG > 1:1829757/1‑150 GACCGCCTGTTCAACGAGCTCAAGGCGCTGGAAGCTGAACACCCGCACCTGGTAACCCCCGACTCGCCCACCCAGCGTGTGGGTG < 1:606834/85‑1 GACCGCCTGTTCAACGAGCTCAAGGCGCTGGAAGCTGAACACCCGCACCTGGTAACCCCCGACTCGCCCACCCAGCGTGTGGGTG > 2:606834/1‑85 GAGCTCAAGGCGCTGGAAGCTGAACACCCGCACCTGGTAACCCCCGACTCGCCCACCCAGCGTGTGG < 1:624599/67‑1 GAGCTCAAGGCGCTGGAAGCTGAACACCCGCACCTGGTAACCCCCGACTCGCCCACCCAGCGTGTGG > 2:624599/1‑67 CCCCCGACTCGCCCACCCAGCGTGTGGGT‑‑‑‑GAGTCGGGGGTTACCAGGTGCGGGTGTTCAGCTTCCAGCGCCCTGAGCTCGTT > 1:1602862/1‑82 CCCCCGACTCGCCCACCCAGCGTGTGGGT‑‑‑‑GAGTCGGGGGTTACCAGGTGCGGGTGTTCAGCTTCCAGCGCCCTGAGCTCGTT < 2:1602862/82‑1 CCCACCCAGCGTGTGGGTGGGCGAGTCGGGGGTTACCAGGTGCGGGTGTTCAGCTTCCAG > 1:2278423/1‑60 CCCACCCAGCGTGTGGGTGGGCGAGTCGGGGGTTACCAGGTGCGGGTGTTCAGCTTCCAG < 2:2278423/60‑1 CCACCCAGCGTGTGGGTGGGCGAGTCGGGGGTTACCAGGTGCGGGTGTTAAGCTTCCAGCGCCTTGAGCTCGTTGAACAGGCGGTCGTATTCGGCATCAGGCACGCTGGGCTCGTCGAGCACGTAGTAGCGATAATTGTGCTGATCGAGC > 2:1800661/1‑150 CCACCCAGCGTGTGGGTGGGCGAGTCGGGGGTTACCAGGTGCGG > 1:102966/1‑44 CCACCCAGCGTGTGGGTGGGCGAGTCGGGGGTTACCAGGTGCGG < 2:102966/44‑1 GGTGGGCGAGTCGGGGGTTACCAGGTGCGGGTGTTCAGCTTCCAGCGCCTTGAGCTCGTTGAACAGGCGGTCGTATTCGGCATCAGGCACGCTGGGCTCGTCGAGCACGTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTC < 1:556681/150‑1 gGGGCGAGTCGGGGGTTACCAGGTGCGGGTGTTCAGCTTCCAGCGCCTTGAGCTCGTTGAACAGGCGGTCGTATTCGGCATCAGGCACGCTGGGCTCGTCGAGCACGTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGA < 1:2920599/149‑1 TGCCGAGCTCGATCAGCACAATTATCGCTACTACGTGCTCGACGAGCCCAGCGTGCCTGATGCCGAATACGACCGCCTGTTCAACGAGCTCAAGGCGCTGGAAGCTGAACACCCGCACCTGGTAACCCCCGACTCGCCCACCCAGCGTGTGGGTGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/4861062‑4860907‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgggtggGCGAGTCGGGGGTTACCAGGTGCGGGTGTTCAGCTTCCAGCGCCTTGAGCTCGTTGAACAGGCGGTCGTATTCGGCATCAGGCACGCTGGGCTCGTCGAGCACGTAGTAGCGATAATTGTGCTGATCGAGCTCGGCACGCAGTTCGA > NC_002947/4860926‑4861072 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |